Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0608 ATGGCGTCCCTCCACTCACTCCCTAAACCCATCTACCAGAATCTCCCTTCACCTACAAATCTCTTCCATCACCCACTAAGTCAAAATCTTTCGTTCTCTAGCAGAGAAATCATGATCGCAAGATGTTCGACGATTTATTCTGAAAGTCAAACATCTGATTCTCTTCCTCTGCTCAGTTGCTCAGAGGTTTTAGAGAGGCTAAGATCAAACAGAGAAAACCAGAAAGGCAACCAGCAATACCTTGCTATGTATTCTAGCCTAATTGGTGGAATAACAAATGATCCAGCTGCCATGGTTATCCCCGTTGATGACCACATGGTTCATAGAGGCCACGGTGTTTTCGATACTGCTGCCATAGTCGATGGACATCTCTATGAGTTAGATCAACACCTCGATCGAATACTCAGATCTTCTTCCATGGCCAAAATTGCCCTTCCGTTCAATCGTGACACCATAAGAAGAATCCTCATCCAAACTGTAAGCGCTTCCAAGTGTACAGATGGATCTTTACGATACTGGCTCTCAGCGGGACCCGGTGATTTTCAACTCTCCCCATCCAACTGTCATCAACCGTCCCTTTACGCGGTTGTGATCCACGACAAATCGCCCTTCAATTCCAAGGGCATAAAGGTAATTACATCATCCGTTTCGATAAAGCCTCCGCAATTCGCAACCACGAAGAGCGTGAACTACCTTCCGAACGTTCTTTCGAAGATGGAAGCGGAAGAGAACGGGGCCTACGCTTCAATTTGGTTGGACAATGACGGGTTTGTTGCTGAGGGGCCGAACATGAATGTGGCATTTGTTACAAAACAAAAGGAGATCTTGATGCCTTCATTTGATAATATACTAAGCGGATGCACGGCTAAGAGAGTGTTGACTCTTTCGGAAAGATTGGTTCAGGAAGGTAAGGTAAGAGGAATAAGGGTGGGAAAAGTGAGTATAGAGGAGGGGAAAGATGCTGAGGAGATGATGCTTATTGGAAGCGGAGTTCTTGTTCGGTCTGTATTGCAATGGGACGATCGTGTCATTGGTCACGGGAAAGAGGGTGTGATTACTCAGGCTCTGTTAAATCTTATTATCAAGGATATGAAATCCGGCCCATCATCCGTTCGGATGCCTGTTCCTTATTAA 1134 45.33 MASLHSLPKPIYQNLPSPTNLFHHPLSQNLSFSSREIMIARCSTIYSESQTSDSLPLLSCSEVLERLRSNRENQKGNQQYLAMYSSLIGGITNDPAAMVIPVDDHMVHRGHGVFDTAAIVDGHLYELDQHLDRILRSSSMAKIALPFNRDTIRRILIQTVSASKCTDGSLRYWLSAGPGDFQLSPSNCHQPSLYAVVIHDKSPFNSKGIKVITSSVSIKPPQFATTKSVNYLPNVLSKMEAEENGAYASIWLDNDGFVAEGPNMNVAFVTKQKEILMPSFDNILSGCTAKRVLTLSERLVQEGKVRGIRVGKVSIEEGKDAEEMMLIGSGVLVRSVLQWDDRVIGHGKEGVITQALLNLIIKDMKSGPSSVRMPVPY 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3587827 3589722 - Conep20aG0062500.1 Cone20ag0608 460512

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0608 377 SUPERFAMILY D-aminoacid aminotransferase-like PLP-dependent enzymes 90 364 IPR036038 GO:0003824(InterPro)
Cone20ag0608 377 Gene3D - 58 199 IPR043131 -
Cone20ag0608 377 FunFam D-amino-acid transaminase, chloroplastic 59 198 - -
Cone20ag0608 377 Pfam Amino-transferase class IV 112 339 IPR001544 GO:0003824(InterPro)
Cone20ag0608 377 Gene3D - 201 370 IPR043132 -
Cone20ag0608 377 PANTHER AMINO-ACID AMINOTRANSFERASE 74 372 IPR050571 GO:0019752(PANTHER)
Cone20ag0608 377 FunFam D-alanine aminotransferase 200 367 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0608 K18482 - - mdm:114821670 532.332
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0608 Cone-Chr20:3587827 Cone9ag0197 Cone-Chr9:845400 2.02E-128 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g321 Blo01g01769 . . . . Bpe02g00175 . Bma01g02551 . . Cma01g01430 . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0608 . Csa03g04561 . . . . . . . . . . Sed12g1405 Cmo01g01479 . . . . . . Cpe02g00518 Bhi09g02599 Tan01g3948 Cmetu04g1371 . Hepe01g2230 Mch11g0780 . . . . . . . . . . . Cme04g00166
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012240 1 2 1 1 1 0 1 0 0 0 0 1 1 1 1 1 1 1 1 0 1 1 1 1 1 0 1 2 4 1 28