Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0612 ATGGGAGAAGCAAGTAAAGAAAAGGGTTTTTCAAGAAGTACCAGTAAACATCAAGCAACTACTACTCTCAAAAAAGGATGGGTTCAGCCATTGCCACTGAAGAATCATCCACATAATATGAACCAGAAAAATCCAATTTCAACATCTAGAGATACCTGGATTCAATATTGCTGTGATCACTGCACAACTAAAGAGAGTTGTCATATTGTGCGCTCAAAAACAAAGCTAATGAACATTCTGATAGAAAAAGGGAAACCGCAGGAAGCTAATTCAGTTTTCGACAATTTGATTGAAGAAGGGCACAGACCTTCGCTCGTAACGTATACAACTCTTTTGGCTGCCTTAACCATCCAGAAGCACTTCAAGTCCATACATTTAGTTACATCAAAAGTGGAAGAAAATGGAATGAAACCGGACTCGATATTTTTTAATGCAGTTATTAATGCTTTCTCTGAAGCTGGGAATGTACAGGAAGCCATGGATACCTTTGAGAAGATGAAGGAAAGTGGAATTAAACCCACTACGAGCACCTATAACACATTGATCAAAGGGTATGGTATTGCTGGTATACCTGAAGAATCTCTTAAACTGCTGGATATGATGTCTCAAGAAGGAAGTACAAAACCCAATCTCAGAACCTATAATGTCCTTGTGAGAGCATGGTGTAAGAAGAAGAACATTACAGAAGCATGGAATGTGGTGAATAAGATGGTAGCTTTAGGAATGAAACCAGATGTTGTTACTTACAACACCATAGCAACAGCTCATGTTCAAAATGGAGAAACAGATCGAGCTGAAGAGATGATTATAGAAATGAAAATTAATGGTCTGCAACCTAATGAGAGAACATATGGAATCATTATTAGTGGATATTGCAAGGAAGGTAAACTAAGGGAGGCTATGAGATTTGTTTATATGATGAAAGATGCTGGGATGCATCCCAATCTTGTTGTTTTCAACTCATTGATCAAAGGTTTTGCAGACACTATGGACAGAGACGGGGTTGATAAGGTTTTAACATTGATGAACGAATTTGGAGTCAAACCAGATGTAATTACATTTAGCACCATAATGAATGCATGGAGCGCAGCCGGTTTCATGGTAAAGTGCCGAGAAATATTTGATGATATGGTCAAAGCTGGAATCGAACCCGATGCACATGCATATAGCATTCTTGCTAAAGGGTATGTCCGTTCACAAGAACCTGAAAAAGCGGAAGAATTACTGGACATGATCATCAAATATGGGGTCCACCCAAACGTCGTCATATTCACAACCATCATAAGCGGATGGTGCAGTACAGGAAGAATGGATGATGCGATCCGGGTTCTTAACAAAATGTGTGAATATCAAGTTTCTCCAAATCTCAAAACATTCGAGACTATTATTTGGGGATATGGAGAAGCAAAGCAGCCATGGAAGGCAGAAGAAATGCTCCAAGCCATGAAAGTATTTAACGTTCAGCCTGAGAAATCCACTATCTTGTCAGTCACAGAAGCTTGGCGTGCAATTGGATTTACAAAAGAAGCAAATAGGATGCTGAATAATGCTAAGAGTAAGGAAAAGACCCAGAAAATGGATCACGAGGAAGAGATGCCGATAGAAAGCTCAACAGGTTCGTCTGACTCCAATATTTTGAACATACCTACTTCTGTCGCAGGTGATCATCAAAAAAGGTTGGCTAAGAAAAGCCGAATGGTGTTAAGAGATGCAGAATTTTCTGCAGAGAATTCTGGGCTGGTTACGAAATCTACACTTGTTTCTCCTCATAATTGTAAATTCGGCGAAAGGTTACCAATTATATGCCGGAAGCAATCTCAAGGACAGTTTGGTATGTACAGTCAGCTTGCACATTCATGTACAGTTGTATTTCTGAATTGA 1881 39.34 MGEASKEKGFSRSTSKHQATTTLKKGWVQPLPLKNHPHNMNQKNPISTSRDTWIQYCCDHCTTKESCHIVRSKTKLMNILIEKGKPQEANSVFDNLIEEGHRPSLVTYTTLLAALTIQKHFKSIHLVTSKVEENGMKPDSIFFNAVINAFSEAGNVQEAMDTFEKMKESGIKPTTSTYNTLIKGYGIAGIPEESLKLLDMMSQEGSTKPNLRTYNVLVRAWCKKKNITEAWNVVNKMVALGMKPDVVTYNTIATAHVQNGETDRAEEMIIEMKINGLQPNERTYGIIISGYCKEGKLREAMRFVYMMKDAGMHPNLVVFNSLIKGFADTMDRDGVDKVLTLMNEFGVKPDVITFSTIMNAWSAAGFMVKCREIFDDMVKAGIEPDAHAYSILAKGYVRSQEPEKAEELLDMIIKYGVHPNVVIFTTIISGWCSTGRMDDAIRVLNKMCEYQVSPNLKTFETIIWGYGEAKQPWKAEEMLQAMKVFNVQPEKSTILSVTEAWRAIGFTKEANRMLNNAKSKEKTQKMDHEEEMPIESSTGSSDSNILNIPTSVAGDHQKRLAKKSRMVLRDAEFSAENSGLVTKSTLVSPHNCKFGERLPIICRKQSQGQFGMYSQLAHSCTVVFLN 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3608765 3612437 + Conep20aG0062900.1 Cone20ag0612 460516

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0612 626 MobiDBLite consensus disorder prediction 520 545 - -
Cone20ag0612 626 Pfam PPR repeat family 138 185 IPR002885 -
Cone20ag0612 626 Pfam PPR repeat family 349 397 IPR002885 -
Cone20ag0612 626 Pfam PPR repeat family 419 465 IPR002885 -
Cone20ag0612 626 Pfam PPR repeat family 244 293 IPR002885 -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 420 454 IPR002885 -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 315 349 IPR002885 -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 350 384 IPR002885 -
Cone20ag0612 626 MobiDBLite consensus disorder prediction 520 535 - -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 174 208 IPR002885 -
Cone20ag0612 626 PANTHER OS01G0228400 PROTEIN 11 625 - -
Cone20ag0612 626 Gene3D Tetratricopeptide repeat domain 188 302 IPR011990 GO:0005515(InterPro)
Cone20ag0612 626 Gene3D Tetratricopeptide repeat domain 60 187 IPR011990 GO:0005515(InterPro)
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 139 173 IPR002885 -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 210 244 IPR002885 -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 245 279 IPR002885 -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 385 419 IPR002885 -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 455 489 IPR002885 -
Cone20ag0612 626 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 280 314 IPR002885 -
Cone20ag0612 626 MobiDBLite consensus disorder prediction 1 45 - -
Cone20ag0612 626 SUPERFAMILY HCP-like 78 303 - -
Cone20ag0612 626 Gene3D Tetratricopeptide repeat domain 333 546 IPR011990 GO:0005515(InterPro)
Cone20ag0612 626 NCBIfam pentatricopeptide repeat 422 455 IPR002885 -
Cone20ag0612 626 NCBIfam pentatricopeptide repeat 283 315 IPR002885 -
Cone20ag0612 626 NCBIfam pentatricopeptide repeat 352 386 IPR002885 -
Cone20ag0612 626 NCBIfam pentatricopeptide repeat 143 174 IPR002885 -
Cone20ag0612 626 NCBIfam pentatricopeptide repeat 177 206 IPR002885 -
Cone20ag0612 626 NCBIfam pentatricopeptide repeat 388 421 IPR002885 -
Cone20ag0612 626 NCBIfam pentatricopeptide repeat 247 281 IPR002885 -
Cone20ag0612 626 NCBIfam pentatricopeptide repeat 213 246 IPR002885 -
Cone20ag0612 626 Pfam PPR repeat 208 238 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0612 K17710 - - cit:102615320 838.565
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0612 Cone-Chr20:3608765 Cone2ag0297 Cone-Chr2:1537731 1.03E-23 dispersed
Cone16ag0741 Cone-Chr16:8472380 Cone20ag0612 Cone-Chr20:3608765 2.29E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g333 . Blo12g00798 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0612 . . Chy04g00266 . . . . . . Bpe04g00340 . . Sed13g2120 . . . . . . . . Bhi09g02416 Tan01g3776 Cmetu04g2828 . Hepe01g2116 Mch11g0654 . . . . . . . . . . . Cme04g00297
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013935 1 2 1 0 1 1 0 0 1 0 0 1 0 1 1 0 1 1 0 1 0 1 1 1 1 1 1 2 1 1 23