Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0618 ATGTTATCCGACTTGATTAACTTTCTCCGGTCCTGTTTCCGACCAAGCTCGAACTGTCATGTCCACACCGGTCCAGGTGCCGACTCAACCGGCCGCCAGGACGGGCTACTATGGTACAAAGATGTTGGGCCGCACATGAGTGGTGAATTCTCAATGGCTGTAGTCCAAGCAAACAACTTGCTTGAGGATCAGAGCCAGCTTGAGTCAGGCTGCTTGGGCTCACATGAGTCCGGCCCGTATGGTACATTTGTCGGTGTATATGACGGCCACGGTGGGCCCGAAACTGCCCGCTATGTAAACAATCACCTCTTCCAACATCTCAAGAGGTTTGCTTCCGAGCAAGAAAATATATCAATGGAGGTGGTAATAAAAAAAGCATATCAAGCGACAGAAGAAGGTTTTACATCTATAGTAACCAAACAATGGCCAACCAGCCCGCAAATTGCAGCCGTTGGATCGTGCTGCTTGGTTGGCGTGATTTGTGGTGGGACCCTTTACATTGCTAATGCAGGTGATTCACGTGCCGTTTTGGGGAGGGCCGTAAAAGAAACAGGCGAGGTTCTTTCAATTCAGCTTTCAACCGAACACAATGCAAGTATCGAGTCCGTTAGACAAGAGCTCCATGCCTTACATCCGGATGACCCACAAATTGTCGTCTTGAAGAATGTATGGCGTGTAAAGGGTCTTATACAGATTTCTAGATCTATTGGTGATTTATATCTAAAAAAGCCGGAGTTCAATAGGGAGCCTTTATTTGCGAAGTTTCGTCTTAGAGAACCGTTCAAAAGGCCTATATTGAGCTCTGAACCGTCCGTTTCAACTATTCAATTGCATCAACACGACCGGTTCATCATATTTGCATCAGACGGTCTATGGGAACAACTTACGAATCAGGAAGCAGTTAGTATAGTTCAAAAGCATCCACACAACGGAAGTGCGAAGAGGCTTGTGAAAGCTGCTTTAAAAGAAGCGGCGAAGAAGAGAGAGATGAGGTATTCCGATTTGAAGAAGATCGATCGACGTGTGAGGAGGCATTTTCACGATGATATTACCGTGATTGTATTGTTCTTTGACTCGGATGGTGTTTTTAAGGCTACTAGCTCTTTGAAGGGGGGTCCAAATATTTCGGTGAAAGGTGGTGGAGTTAATCTGCCTCATAAGACTCTGGCTCCTAGTAGTTGA 1182 46.11 MLSDLINFLRSCFRPSSNCHVHTGPGADSTGRQDGLLWYKDVGPHMSGEFSMAVVQANNLLEDQSQLESGCLGSHESGPYGTFVGVYDGHGGPETARYVNNHLFQHLKRFASEQENISMEVVIKKAYQATEEGFTSIVTKQWPTSPQIAAVGSCCLVGVICGGTLYIANAGDSRAVLGRAVKETGEVLSIQLSTEHNASIESVRQELHALHPDDPQIVVLKNVWRVKGLIQISRSIGDLYLKKPEFNREPLFAKFRLREPFKRPILSSEPSVSTIQLHQHDRFIIFASDGLWEQLTNQEAVSIVQKHPHNGSAKRLVKAALKEAAKKREMRYSDLKKIDRRVRRHFHDDITVIVLFFDSDGVFKATSSLKGGPNISVKGGGVNLPHKTLAPSS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3681526 3684383 - Conep20aG0063500.1 Cone20ag0618 460522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0618 393 ProSiteProfiles PPM-type phosphatase domain profile. 64 357 IPR001932 -
Cone20ag0618 393 SMART PP2C_4 43 355 IPR001932 -
Cone20ag0618 393 Pfam Protein phosphatase 2C 81 326 IPR001932 -
Cone20ag0618 393 FunFam Phosphatase 2C family protein 38 367 - -
Cone20ag0618 393 Gene3D - 42 363 IPR036457 -
Cone20ag0618 393 PANTHER PROTEIN PHOSPHATASE 45 356 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cone20ag0618 393 CDD PP2Cc 50 357 IPR001932 -
Cone20ag0618 393 SUPERFAMILY PP2C-like 59 358 IPR036457 -
Cone20ag0618 393 ProSitePatterns PPM-type phosphatase domain signature. 83 91 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone12ag0836 Cone-Chr12:7563588 Cone20ag0618 Cone-Chr20:3681526 3.61E-213 dispersed
Cone12ag1243 Cone-Chr12:9613531 Cone20ag0618 Cone-Chr20:3681526 9.37E-217 dispersed
Cone20ag0618 Cone-Chr20:3681526 Cone8ag1300 Cone-Chr8:10628497 3.30E-209 dispersed
Cone17ag1098 Cone-Chr17:8157709 Cone20ag0618 Cone-Chr20:3681526 3.15E-245 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0618 - - - 0.0