Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0619 ATGAAGCAGAAGAAGCCGGAGGTGCCTGAAACGGAGCCGTGGCGAAGGAGTGAAGCTCCGATCATGTTCAATCACGGCACTGACATGAAGCGGAGCGCTTCGGAGCTGGATTTTGAAGAGTGTATGAAGAAGACGATGAGTATTATCAATAATGCTAATTCGAACGATCACGATCAGAAAACGGCCGGTACGGAATCCGAAAGCTGCACTCTCAGAAACGGCGAGATCGGTGATGGAGAAACCGCCGGAAGTTTCCGAAGTCCAACAGTCAAGAGTATGCAAGAGTCCGATATCTTCTACGGTGATCTTTGCTCCTCCGATCTCGGTTTCTCCTTCGATAATCGGGAAACGGGTAATGCTTTTTCGGGTTGCGGTGGACAAACAGAAGTTCCTCCTCACTGGGCTCAACAAAATCACACTACTAAGATTTCCATCTCTGCGACGATGGATTCTCAGTCGTCAATATTTGTGAGCAGTCCAGTATCAGCTGATAAAACACCATCCCAAGACAATCAAGTAGGTAAAAGCAGGTCCTCAAGTGAGCAGTCGGACAATGACTACCTCGAGATAGAAGGTGGTTCATGCGACCAAAGCGCAGATAATATTGATCTGAAACGCATTAGAAGGATGGTTTCTAACAGGGAGTCTGCAAGGCGATCAAGGAGGAGGAAACTAGCACATTTAGCAGAACTTGAGTACCAGGTAGAGCAGCTAAAAGGAGATAATGCGTCTCTGTTCAAGCAGCTTACAGATGCAACGCAACACTACCATCATGCAGATACAAATTACAGTGTGCTTAAATCCGATGTAGAAGCTTTAAGAGCCAAGGGAAAATTGGCTGAGGAAATGTTAACAAGAGGAGGGTCGTTAAGCTGCAGCCTGAACCTGCTTCAGAGTCATTTAAGTCCGAACACAGTCCAACCAGTAGTTAGTAGTAATTCTAGTCTTAGGCGAGTACCTGATGTTTCGCCTACCATTAATATCCACCAAAGAGGAGCAGGGGACAACAATATACAACTTAACGGCAGCGAATTACCTGACAGTGCCTGGGCAGATTTCGGCTGA 1065 46.57 MKQKKPEVPETEPWRRSEAPIMFNHGTDMKRSASELDFEECMKKTMSIINNANSNDHDQKTAGTESESCTLRNGEIGDGETAGSFRSPTVKSMQESDIFYGDLCSSDLGFSFDNRETGNAFSGCGGQTEVPPHWAQQNHTTKISISATMDSQSSIFVSSPVSADKTPSQDNQVGKSRSSSEQSDNDYLEIEGGSCDQSADNIDLKRIRRMVSNRESARRSRRRKLAHLAELEYQVEQLKGDNASLFKQLTDATQHYHHADTNYSVLKSDVEALRAKGKLAEEMLTRGGSLSCSLNLLQSHLSPNTVQPVVSSNSSLRRVPDVSPTINIHQRGAGDNNIQLNGSELPDSAWADFG 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3709213 3711381 + Conep20aG0063600.1 Cone20ag0619 460523

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0619 354 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 203 254 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0619 354 Pfam bZIP transcription factor 204 256 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0619 354 MobiDBLite consensus disorder prediction 155 187 - -
Cone20ag0619 354 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 208 223 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0619 354 PANTHER BZIP TRANSCRIPTION FACTOR RISBZ3-RELATED 29 331 IPR044168 GO:0003700(InterPro)
Cone20ag0619 354 MobiDBLite consensus disorder prediction 51 71 - -
Cone20ag0619 354 FunFam BZIP transcription factor 203 254 - -
Cone20ag0619 354 SUPERFAMILY Leucine zipper domain 204 257 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Cone20ag0619 354 Gene3D - 204 260 - -
Cone20ag0619 354 Coils Coil 228 248 - -
Cone20ag0619 354 MobiDBLite consensus disorder prediction 1 28 - -
Cone20ag0619 354 MobiDBLite consensus disorder prediction 51 89 - -
Cone20ag0619 354 SMART brlzneu 201 265 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0619 K25784 - - vvi:100264680 207.608
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1721 Cone-Chr1:58045383 Cone20ag0619 Cone-Chr20:3709213 9.96E-17 dispersed
Cone20ag0619 Cone-Chr20:3709213 Cone3ag0700 Cone-Chr3:3576229 7.38E-22 dispersed
Cone17ag1096 Cone-Chr17:8148030 Cone20ag0619 Cone-Chr20:3709213 5.29E-187 wgd
Cone20ag0619 Cone-Chr20:3709213 Cone7ag1783 Cone-Chr7:11713410 1.72E-28 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g231 . . . . . . . . . . . . . . Sed01g1291 . . Bhi04g01129 Tan02g2590 Cmetu03g1692 . . . . . . . . . . . . . Cone17ag1096 Cone20ag0619 . . . Cme03g01717 . . . . . . . . . . . . . . . . . . . . . . . . Cla08g01246 Cam08g1704 Cec08g1284 Cco08g1405 Clacu08g1401 . Cre08g1186 Lsi08g01109 Csa02g02299 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006028 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45612 PF00582 Usp 3.20E-07 CL0039 Cone TF