Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0623 ATGGCTAATCACGATCACAAACCGTATTCTTCTTCTTCTTCGACTTTCGTTTTGTTAATCTTACTGTCCTTCTTCGTTTTGTCATCTTCATCGCAATCACTAAGTTTACCTCAAGCTTTAATTAAATTCAAGAGCTCTATGTCAAACAACTCTGCGTTCGACAACTGGAACGCATCGGTCCCGATCTGCAATGGCGATAAGAGTTTCTGGTTCGGAATCACTTGCAAGGACAATAGCTTCTGGGGAATCCGCCTCGAAAACTTGACCTTGACCGGCGAGATCGACATTGACTCGCTGATGAACTCGCCGGTTCTGGTCAGGAGCTTGAGCTTGATGAACAACAGCTTTCAAGGTCCGTTGCCGGACGTGAGGAAATTGGGTGCGTTGAAGGCTTTGTACATGTCGGACAACAGATTTTCAGACGAGATTGACGACGGCGCCTTTCAAGGGATGCGTTCTTTGAAGAAAATTTATTTGGCGCGAAACCAATTTACTGGGAAAATTCCCAACTCTTTAGCCGGTTTGCCTTCGCTTCTGGAGTTGGGTCTTGAGGAGAACCGGTTTGTGGGTCAGATACCGAATTTTTCACCGAGGGATTGGAAATACTTGAATTTTTCGGATAATCGGTTGGAGGGTCCGATACCGGATAGTTTCGGAGATACAGAACAGAGTGCAGTCCTTCACAACAAAGGGTTATGTGGAAAGCCGCTAGGCCCATGCGAGCGCAAGAGAAAGTGGACCACATGGTACATACTAATTGGGCTTTCTCTGGGCTTCATTGCCATAGCGTCAATCGTCGTCCTTCGTCTCCGTCTGGGCCAACTATCAAAATCTGATACACAATCCCCCCAAGACACAATAAAAGCCCAAAATAAATTCGAAACATACAACAAAATGGGCCTGAAAGAGGCCCAATCTCCGGACTATGTCGAGAGCTTGAGAAAGAGCGAGAGTGGAGGAAACAGCCTGTGCTTCGTGAGGGACGGCAGGCAGTGGTTCGACTTAGAAGAGCTACTCCGGGCCTCGGCTGAGGTCTTGGGCAGCGGGAATTTTGGGTCATCTTACAAGGCCAGCCTTTTGAATGGGCCCACTGTGGTTGTGAAGAGGTTTAAGAAAATGAATAACGTGGGAAGAGAAGAGTTTCATGAGCATATGAAGAGGCTTGGACGCTTGTCACACCCAAACTTGCTCCCTCTTGTGGCTTTCTATTATAGGAAGGATGACAAACTTTTGGTCTCTGATTTTGTTGAAAGTGGTAGCTTGGCTAGTCATCTTCATGGAAAGCGGGCGCCGGGTCAACCTGGAATGGACTGGCCGACCCGGCTGAAGATCGTAAAGGGAGTAGCCAGAGGATTATCTTACCTCCACCAACAATTCCCAAATCTCCCCCTTCCTCACGGACATCTCAAATCCTCAAACGTCCTTCTCACTCAAAATAACGATCCTATCCTTACCGACTACGCTCTCTCTCCTCTGATCAACAGAGAACACGCTCACCACCTCATGATCGCTTTCAAGTCTCCCGAATTCAGCCCAGAATCGCAGCAGGATCGCACATCCAGAAAAACGGACGTCTGGAGCCTAGGGATTCTGATCCTGGAACTCCTGACCGGACGATTTCCGGCGAATTATCTCCGGCAAGGGAACAGCAAGGAGGCGAACGACGATCTGGCGGCGTGGGTGAGCTCAGTGGTGAGGGAGGAGTGGACGGGGGAGGTGTTTGATACGGAGATGCGAGGGACGAGGAACGGAGATGTGGAGATGTTGAAGTTGTTGAAGATCGGGATGTGCTGCTGCGAGTGGGAGGTGGAGCGGCGGTGGGAGCTGGCGGAGGCGGTGGAGAAGATCGAGGCGTTGAGGGAGAGAGATGTAAATGTTGATGATGATTATTATAGCTCGTTTGGTAGTGAAGCCGATTTGCATTCTTCCAAGGGGATGGTTACCGAAGACGAGTTCTCCTTTCTCGGTTAG 1971 49.37 MANHDHKPYSSSSSTFVLLILLSFFVLSSSSQSLSLPQALIKFKSSMSNNSAFDNWNASVPICNGDKSFWFGITCKDNSFWGIRLENLTLTGEIDIDSLMNSPVLVRSLSLMNNSFQGPLPDVRKLGALKALYMSDNRFSDEIDDGAFQGMRSLKKIYLARNQFTGKIPNSLAGLPSLLELGLEENRFVGQIPNFSPRDWKYLNFSDNRLEGPIPDSFGDTEQSAVLHNKGLCGKPLGPCERKRKWTTWYILIGLSLGFIAIASIVVLRLRLGQLSKSDTQSPQDTIKAQNKFETYNKMGLKEAQSPDYVESLRKSESGGNSLCFVRDGRQWFDLEELLRASAEVLGSGNFGSSYKASLLNGPTVVVKRFKKMNNVGREEFHEHMKRLGRLSHPNLLPLVAFYYRKDDKLLVSDFVESGSLASHLHGKRAPGQPGMDWPTRLKIVKGVARGLSYLHQQFPNLPLPHGHLKSSNVLLTQNNDPILTDYALSPLINREHAHHLMIAFKSPEFSPESQQDRTSRKTDVWSLGILILELLTGRFPANYLRQGNSKEANDDLAAWVSSVVREEWTGEVFDTEMRGTRNGDVEMLKLLKIGMCCCEWEVERRWELAEAVEKIEALRERDVNVDDDYYSSFGSEADLHSSKGMVTEDEFSFLG 656
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3723995 3726618 + Conep20aG0064100.1 Cone20ag0623 460527

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0623 656 Pfam Leucine rich repeat 129 188 IPR001611 GO:0005515(InterPro)
Cone20ag0623 656 ProSiteProfiles Protein kinase domain profile. 340 619 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0623 656 Pfam Protein kinase domain 344 613 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0623 656 SUPERFAMILY L domain-like 41 225 - -
Cone20ag0623 656 Gene3D Ribonuclease Inhibitor 37 197 IPR032675 -
Cone20ag0623 656 SUPERFAMILY Protein kinase-like (PK-like) 344 620 IPR011009 -
Cone20ag0623 656 Gene3D Phosphorylase Kinase; domain 1 310 415 - -
Cone20ag0623 656 Gene3D Ribonuclease Inhibitor 198 247 IPR032675 -
Cone20ag0623 656 FunFam Pollen receptor-like kinase 1 416 630 - -
Cone20ag0623 656 FunFam pollen receptor-like kinase 1 310 415 - -
Cone20ag0623 656 Pfam Leucine Rich Repeat 201 219 IPR001611 GO:0005515(InterPro)
Cone20ag0623 656 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 38 620 IPR046959 -
Cone20ag0623 656 Gene3D Transferase(Phosphotransferase) domain 1 416 636 - -
Cone20ag0623 656 Pfam Leucine rich repeat N-terminal domain 38 75 IPR013210 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0623 K28077 - - csv:101214710 657.907
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0334 Cone-Chr16:4275471 Cone20ag0623 Cone-Chr20:3723995 2.31E-156 dispersed
Cone20ag0623 Cone-Chr20:3723995 Cone7ag0796 Cone-Chr7:5641062 2.85E-153 dispersed
Cone16ag0765 Cone-Chr16:8626927 Cone20ag0623 Cone-Chr20:3723995 6.52E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g244 . . . . . . . . . . . . . . . . . Bhi04g01111 . . . . . Lcy13g1363 . . . . . . . . . . Cone20ag0623 . . . Cme03g01708 . . . . Bpe14g00541 . . . . . . . . . . . . . . . . . . . Cla08g01254 . . . . . . Lsi08g01116 Csa02g02307 . Cme04g00319
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82549 PF00847 AP2 4.60E-12 CL0081 Cone PK