Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0627 ATGCAACAGAGGCTAAAGCAACAGCAGCAGCAACAGCAAGCCCTAATGCAGCAAGCTCTTCTTCAGCAGCCTCATATGTATCATCCTGGAATGCTCGCCGCTGCCATGTCTCAGATGGAGCCTATCCCAAGCGGAAATCTACCTCCTGGCTTTGACCCTACTTCATGCTGCAGTGTATACGTAGGTAATATTCATGTAAATGTTACCGAGAAGCTTCTTGCTGAAGTTTTCCAGACCGCTGGTCCTCTTGCAGGATGCAAGCTCATAAAAAAGGATAAGTCATCATTTGGTTTTATTGAGTACCATGATCGAAGTTCTGCATCTCTTGCAATAATGAACTTGCACGGACGGCAACTTTATGGTCAGGCACTTAAAGTGAATTGGGCATATGCTAATACCCAGAGGGAGGATACATCAGGGCACTTCAATGTATTTGTTGGTGATTTAAGTTCAGAGGTTACCGATGCAACTTTATATGCATGCTTCTCAGTCTATCCTAGTTGCTCTGATGCAAGGGTCATGTGGGATCACAAAACTGGCCGTTCGAAAGGATATGGCTTTGTTTCGTTCCGCAGTCAACAGGAGGCCCAGAGTGCTATTAATGACCTGACTGGTAAATGGCTTGGGAATAGGCAAATAAGATGCAATTGGGCAACCAAAGGTGCTACCTCCAGTGAAGATAAGCAGATCAACGACAACCAGAATGCAGTTGTACTTACAAATGGATCTTCAGATGGAGGTCAGGATACTAATAACGAGGATGCACCCGAAAACAATCCTTCTTACACTACTGTTTATGTTGGGAACCTTTCCCATGAGGTATCCCAAGCTGAACTCCATTATCAGTTTCATGCACTTGGGGCTGGGGTTCTTGAAGAAGTGCGTGTTCAAAGAGATAAAGGTTTCGGGTTTGTCAGATACAGCACTCATGAAGAAGCAGCTTTGGCCATTCAGCTTGCTAATGGCAGAATAATCCATGGCAAACCCATTAAGTGTTCTTGGGGTAGCAAGCCAACCCCTCCTGGCACGGCCTCAAATCCACTACCCCCACCTGTTCAATCCTATCCGCTACTTCCCACTGCTAGTATGAACCAGGGCTATTCTCCAGCCGAATTGTTGGCTTATCAGCGCCAACTTGCCTTGAGCCAGGCTGCTGCTTCTGGCCTATCAGGTCAAGCCCTTCTGCAGATGACTGGCCAGCATGGCCTGGCTGCTGCTTCCATGGGTTTAAACTCCGGTGGGTCCCAGAATATGTATGATGGATACCCTAATAGTTCGTCAGGTCAACAGCTAATGTATTACCGTTAA 1308 46.64 MQQRLKQQQQQQQALMQQALLQQPHMYHPGMLAAAMSQMEPIPSGNLPPGFDPTSCCSVYVGNIHVNVTEKLLAEVFQTAGPLAGCKLIKKDKSSFGFIEYHDRSSASLAIMNLHGRQLYGQALKVNWAYANTQREDTSGHFNVFVGDLSSEVTDATLYACFSVYPSCSDARVMWDHKTGRSKGYGFVSFRSQQEAQSAINDLTGKWLGNRQIRCNWATKGATSSEDKQINDNQNAVVLTNGSSDGGQDTNNEDAPENNPSYTTVYVGNLSHEVSQAELHYQFHALGAGVLEEVRVQRDKGFGFVRYSTHEEAALAIQLANGRIIHGKPIKCSWGSKPTPPGTASNPLPPPVQSYPLLPTASMNQGYSPAELLAYQRQLALSQAAASGLSGQALLQMTGQHGLAAASMGLNSGGSQNMYDGYPNSSSGQQLMYYR 435
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3745018 3749133 - Conep20aG0064500.1 Cone20ag0627 460531

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0627 435 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 7 338 IPR050825 GO:0003729(PANTHER)|GO:0003729(InterPro)
Cone20ag0627 435 SMART rrm1_1 143 216 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 SMART rrm1_1 58 127 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 SMART rrm1_1 264 333 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 Pfam RNA recognition motif 265 331 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 Pfam RNA recognition motif 144 214 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 Pfam RNA recognition motif 59 125 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 Gene3D - 241 341 IPR012677 -
Cone20ag0627 435 MobiDBLite consensus disorder prediction 238 262 - -
Cone20ag0627 435 SUPERFAMILY RNA-binding domain, RBD 135 245 IPR035979 GO:0003676(InterPro)
Cone20ag0627 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 142 220 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 FunFam Nucleolysin TIAR-like protein 1 140 - -
Cone20ag0627 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 57 131 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 337 IPR000504 GO:0003723(InterPro)
Cone20ag0627 435 FunFam Nucleolysin TIAR-like protein 141 238 - -
Cone20ag0627 435 SMART rrm2_1 143 216 IPR003954 GO:0003676(InterPro)
Cone20ag0627 435 SMART rrm2_1 264 333 IPR003954 GO:0003676(InterPro)
Cone20ag0627 435 SUPERFAMILY RNA-binding domain, RBD 41 135 IPR035979 GO:0003676(InterPro)
Cone20ag0627 435 FunFam Oligouridylate-binding protein 1C 240 341 - -
Cone20ag0627 435 CDD RRM2_PUB1 141 220 - -
Cone20ag0627 435 Gene3D - 1 140 IPR012677 -
Cone20ag0627 435 SUPERFAMILY RNA-binding domain, RBD 249 341 IPR035979 GO:0003676(InterPro)
Cone20ag0627 435 Gene3D - 141 221 IPR012677 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0627 K13201 - - gmx:100790916 722.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0642 Cone-Chr10:3081999 Cone20ag0627 Cone-Chr20:3745018 8.86E-16 dispersed
Cone17ag0055 Cone-Chr17:311723 Cone20ag0627 Cone-Chr20:3745018 4.69E-180 dispersed
Cone20ag0627 Cone-Chr20:3745018 Cone20ag1350 Cone-Chr20:8674351 1.30E-177 dispersed
Cone4ag0832 Cone-Chr4:5400010 Cone20ag0627 Cone-Chr20:3745018 1.78E-08 dispersed
Cone17ag1089 Cone-Chr17:8113275 Cone20ag0627 Cone-Chr20:3745018 3.65E-277 wgd
Cone20ag0627 Cone-Chr20:3745018 Cone7ag0929 Cone-Chr7:7271737 2.91E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0627 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000889 3 4 2 3 2 2 5 3 2 3 3 2 4 3 3 5 2 3 3 2 2 3 3 1 2 2 3 3 5 3 86