Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0629 ATGGCTGTTGAGTTTATCAGATTCGCAAAGATGGACGATCAGATGGCTATACAAGAAGCTGCATCACAAGGCTTGAAGAGCATGGAGCACATGATCCGTCTCCTCTCCCATCATCAACAACAATCTAACCGCGTTGATTGCACCGATATCGCCGATGTCACCGTTTCCAAGTTCAAAAAAGTCATATCTCTTCTCGACCGTGCCGGACACGCCCGGTTCAGGCGTGGCCCGGTTCACTCATCTCCTTCACCGACAACATCCGCCCCCGCTTCTGCATCTGTCTCCGTTCCTCACTCTCTAACGCTAAACCTTTCTCCGACTCCATTTACTTCTTTAACTACCGTTCCTCAGGTTCAGATCTCTGCCCCAGCAGCTGTACCTCACCCTCCGATCAACGTTCCGGCGAGTTTCGCTCAGTCTCAGTCGCAGTCGCAGACTCTGACTCTTGATTTCACGAAACCTAATTTATTTAATTCTAATTCCAACAACACTGATATCGAGTTCACGAAGGAGAGCTTTAGCGTGGATTCGAGCTCGTCGTTCATGTCATCGACTATAACCGGAGACGGAAGCGTATCAAACGGCAAGCTAGGGACGTCTGTCCTCTTGGCTCAGGGGACGGCAGTATCCGGCGGCAAGCCGCCTCTATTTACGGCTCCAAACAAAAAGAGATGTCATGAGCACAGTCACTCCGACAACATCTCCGGCAAAATTTCCGGCTCCGCCTCAGCCTCCGAAAAATGCCATTGTTCTAAAAGAAGGAAAAATCTGGTGAAGAAAACAGTTACAGTGCCGGCAATAAGCTCGAAGATTGCCGATATCCCACCTGACGAGTTCTCGTGGAGAAAGTACGGTCAAAAGCCGATCAAGGGTTCACCATACCCACGAGGGTATTACAAGTGTAGTACAGTGAGAGGATGTCCAGCGAGGAAACACGTGGAGAGATCTCCAGATGATCCGGCGATGCTGATTGTAACATACGAGGGGGAGCACCGTCACACACAGGCAGCGATGCAGGGGACCGTATCTGGTAGAGTTGGATTGGTATTCGAGTCAACTTTAGCATAG 1068 50.19 MAVEFIRFAKMDDQMAIQEAASQGLKSMEHMIRLLSHHQQQSNRVDCTDIADVTVSKFKKVISLLDRAGHARFRRGPVHSSPSPTTSAPASASVSVPHSLTLNLSPTPFTSLTTVPQVQISAPAAVPHPPINVPASFAQSQSQSQTLTLDFTKPNLFNSNSNNTDIEFTKESFSVDSSSSFMSSTITGDGSVSNGKLGTSVLLAQGTAVSGGKPPLFTAPNKKRCHEHSHSDNISGKISGSASASEKCHCSKRRKNLVKKTVTVPAISSKIADIPPDEFSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERSPDDPAMLIVTYEGEHRHTQAAMQGTVSGRVGLVFESTLA 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3786118 3788077 + Conep20aG0064700.1 Cone20ag0629 460533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0629 355 Pfam WRKY DNA -binding domain 277 333 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0629 355 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 16 337 IPR044810 GO:0003700(InterPro)
Cone20ag0629 355 SMART WRKY_cls 275 335 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0629 355 Gene3D WRKY domain 260 336 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0629 355 MobiDBLite consensus disorder prediction 73 92 - -
Cone20ag0629 355 FunFam WRKY transcription factor 65 259 336 - -
Cone20ag0629 355 ProSiteProfiles WRKY domain profile. 270 336 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0629 355 SUPERFAMILY WRKY DNA-binding domain 273 334 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0629 355 Pfam Plant zinc cluster domain 222 273 IPR018872 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0629 Cone-Chr20:3786118 Cone6ag1414 Cone-Chr6:11365253 4.59E-61 dispersed
Cone17ag1083 Cone-Chr17:8073748 Cone20ag0629 Cone-Chr20:3786118 7.81E-149 wgd
Cone20ag0629 Cone-Chr20:3786118 Cone4ag1861 Cone-Chr4:13342698 3.60E-128 wgd
Cone20ag0629 Cone-Chr20:3786118 Cone7ag1766 Cone-Chr7:11645922 9.85E-125 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45613 PF10961 SelK_SelG 2.50E-18 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0629 - - - 0.0