Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0630 ATGGCGGCATCGCCATCTGGGAATAATGAGAAGAGCATTAAGAATTTAGTATCTGCTAGGAAAGCATTGAAGCTTAACTTGGAGAAATCTAAGGCTCTAGGGTTAGCACTAGCAAAATCAGGGCCTAGATTGGAAGAGATTAACCACAGATTACCTTCTCTCGGAGCGGCTGTCCGGCCTATTCGTGCCGACGAGGAAGCCCTTGTTGCAGTGGGAGGTCACATTAACCGTGCAGTAGGCCCGGCTGCGGCAGTGCTTAAGGTGTTTGATGCTGTTCACGGGCTTGAGAAGTCGTTATTGTCAGACCCGCAGAATGACCTCCCTGGTTACTTATCGGTCCTGAAACGCCTGGAAGAGGCTTTGAGATTCTTAGGAGATAATTGTGGATTAGCAATTCAATGGTTGGAGGATATAGTTGAGTATTTGGAGGATAATACAGTTGCAGATGAACAGTACCTTACGAATTTGAAAATGTCATTGAAAAATCTTCGAGAATTGCAAAGGAATGAAGAAAGGACTTATCTTGATGGGGGGCTTTTGGATGCTGCATTTGAAAAATTAGAAAATGAGTTCAGACGGCTGCTTACGGAACACAGTATACCACTTCCCATGTCTTCATCTTCATTGCCTGGGGAACAAGCTTGCATTGCACCATCACCTCTACCTGTAACCATTATTCAGAAACTACAAGCGATTCTGAGGAGGTTGATTGCTAACAATAGGCTTGAGAAGTGTATATCAATTTATGTTGACGTTCGCAGTTCTAACGTTAGGGCAAGTTTGCAGGCACTTGGTTTGGATTACCTTGAGATATCTATTTCAGAATTCAATGATGTGCAGAGTATAGAGGGGTATATAGGTCAATGGGGAAAGCATTTGGAGTTTGCTGTAAAACACTTGTTTGAGGCAGAGTATAAACTTTGCAATGATGTCTTTGAGAGGATCGGTTTGGATGTGTGGATGGGTTGCTTTGCCAAGATAGCAGCTCAGGCGGGCATTCTTGCATTTCTTCAATTTGGGAAGACAGTTACAGAAAGCAAGAATGACCCGATTAAGATGTTAAAGCTGCTAGATATATTTGCTTCTTTGAGCAAATTGAGACTGGACTTTAACCGGCTTTTTGGTGGAGCAGCTTGTTCTGAAATCCAAAATCTCACAAGGGATCTGATTAGGAGGGTGGTTGATGGAGCAGCTGAGATCTTCTGGGAACTTCTTGTTCAGGTGGAGTTACAGAGGCAAAACCCACCCCCTTCAGATGGGGGTGTGCCCAGATTAGTGAGTTTCACCATAGATTACTGTAACAAACTGCTTGGGGATGATTATAAGCCAATTCTAACCCAAGCTCTGATCATTCACCGAAGTTGGAAGAATGAGAAATTCCTAGACGGGCTCCTTGACAAAGAGGTTCTGAACATTGTTAAAGCCATTGAGACCAATATGGAGACTTGGATGAAGGCTTATGATGATTCAATCCTCTCAAACTTCTTTGCAATGAACAACTATGGGCACTTGTTCAGGCACTTAAAAGGTACAAAATTGGGGCGCCTTTTGGGGGATTCTTGGCTACGAGAACATGAACAATACAAGGATTACTATGCCACCATTTTCTTGAGAGAGAGCTGGAGCAAGCTTCCGGGTCATTTAAGTAGGGAAGGTCTGATTACATTCTCGGGCGGGCGGGCAACTGCCCGGGATCTTGTCAAGAAACGGATGAAAACATTCAATGAAGCTTTTGACGGAATTTATAAGAAACAATCGAATTGGGTTTTGCCGGATAAAGAATTGAGGGAGAGGACATGTCAGCTTATAGTGCAAGCAGTTGTACCCGTATATCGAAGCTTCATGCAAAACTATGGCCCTCTAGTTGAGCAAGATCCTAGTTCGAATAAATATGCAAAGTATACAGTACAGAATTTGGAGAAAATGATAATGACACTTTTCCAGCAAAAACCAAGCAGACATGGCAGTTTCAAAGTGGGGAAGCGGCTTAGTGGGAAATTCAGCAGTAGGGTAACGGAAAATTGTCTTTCTGATTCTCCTGTTATGTGA 2049 43.24 MAASPSGNNEKSIKNLVSARKALKLNLEKSKALGLALAKSGPRLEEINHRLPSLGAAVRPIRADEEALVAVGGHINRAVGPAAAVLKVFDAVHGLEKSLLSDPQNDLPGYLSVLKRLEEALRFLGDNCGLAIQWLEDIVEYLEDNTVADEQYLTNLKMSLKNLRELQRNEERTYLDGGLLDAAFEKLENEFRRLLTEHSIPLPMSSSSLPGEQACIAPSPLPVTIIQKLQAILRRLIANNRLEKCISIYVDVRSSNVRASLQALGLDYLEISISEFNDVQSIEGYIGQWGKHLEFAVKHLFEAEYKLCNDVFERIGLDVWMGCFAKIAAQAGILAFLQFGKTVTESKNDPIKMLKLLDIFASLSKLRLDFNRLFGGAACSEIQNLTRDLIRRVVDGAAEIFWELLVQVELQRQNPPPSDGGVPRLVSFTIDYCNKLLGDDYKPILTQALIIHRSWKNEKFLDGLLDKEVLNIVKAIETNMETWMKAYDDSILSNFFAMNNYGHLFRHLKGTKLGRLLGDSWLREHEQYKDYYATIFLRESWSKLPGHLSREGLITFSGGRATARDLVKKRMKTFNEAFDGIYKKQSNWVLPDKELRERTCQLIVQAVVPVYRSFMQNYGPLVEQDPSSNKYAKYTVQNLEKMIMTLFQQKPSRHGSFKVGKRLSGKFSSRVTENCLSDSPVM 682
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3788807 3791674 + Conep20aG0064800.1 Cone20ag0630 460534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0630 682 FunFam Exocyst subunit Exo70 family protein 135 653 - -
Cone20ag0630 682 Pfam Exocyst complex component Exo70 N-terminal 80 197 - -
Cone20ag0630 682 SUPERFAMILY Cullin repeat-like 85 647 IPR016159 -
Cone20ag0630 682 PANTHER EXOCYST COMPLEX PROTEIN EXO70 97 649 IPR004140 GO:0000145(PANTHER)|GO:0000145(InterPro)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Cone20ag0630 682 Coils Coil 153 173 - -
Cone20ag0630 682 Pfam Exo70 exocyst complex subunit C-terminal 288 643 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
Cone20ag0630 682 Gene3D Exocyst complex component Exo70 137 655 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0630 Cone-Chr20:3788807 Cone5ag0416 Cone-Chr5:1766096 2.06E-69 dispersed
Cone17ag0022 Cone-Chr17:168964 Cone20ag0630 Cone-Chr20:3788807 1.43E-227 transposed
Cone17ag1082 Cone-Chr17:8069916 Cone20ag0630 Cone-Chr20:3788807 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0630 K07195 - csv:101207478 1089.72