Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0634 ATGGATGCGTATTCTGGAAAAAGAGCGGCTAATGGGGTAGTTGCATCTAGAAAGGAATTTGGTCTTATTCTAAAGGATAGAGGTAATAATAGAGATCGAAATGGTCAATTCTGTAACCGGCTTGGTTGTAGTGGTAGACTGAACTCTGCAAGAGGTGCTCGAGGTAGTTACTTTGAGAAATCTGCAACACCATCTTTCCGAGCTTCTTCCAATGGGAAAGAAATAGTAGGAAGCTCCTCTAGGAACTCATCCACCGTCAGCAATCCCAATAAATCTATCGTTGGGTCCCACAGAAAGTTATCTTCCGGGTTAGAAACGGATTCATCTGAGACTAGCAGCATGCAAGATGAGCCAGAAGTTACTGAACTAATCCCTCCACCTCAAAAAATCCAGAAAGGTCTTAATCTTGGTTCCAAAAGCCCCCATTCTAGTGAGACTGTGCTGCTAGATGGTGGAAGCTCTAGTGTAGCATCAAATGTAAGGTCTAAGAGAACTTATTACAATCAAAGATCAGGGGTAAGAAATCACGATACCCGAGTGGGTTCTTCTGCTTCTTCCATTAGCTCTAAACTCCCTGAGCAATCAACTCGTGCTGGGAAGAACCTTGGATTGAAATCAATATCTGACAGCATCCAATTGGGCTCTTCTTCTTCTTCATCGGATTCAAACCTGACTAGAAGGAAGGAAGCAACTAATAAAAATAGGAATTCTGAAGGAGAAAGTAGCTCTGCCACTAAAGGAAAGAAGACTAGCTGGTCATCCTTGGAAGGAAGGAATACTGGTTATAGTTATAGAATCTCCAGGTCTGATTCCTCAGGAGCAAGGAATAATATCCCTCCTCACAGGGAAAATGGTGTTGCATCATCTGTTAGGACTAGGAGATCCGTTAGTGGGCAGAACAGGTCATCACGTCTCACTACTGAAAGTAGTCTCCCTCTAAATGAGCCCCCTATAATGTTCTCAGAGATTTCTAGACCAAACATCTCTATTGATGTGAATGCTCCAAGTTCATCTCGTCAATTATCTTCAGATTTGACCTCAAGTCATTCAGATTTGACCTCAAGTCATTCAAATGGAGAGGTTGGGTTGACCTGCTCTTATATGAATCAGGGGAGTTTCCGGCATTACAATATTGATGGTATTGCAGAGGTGTTGTTGGCACTTGAGAGGATTGAACAAGATGAAGAACTAACATATGAGCAAGTAATTCTCCTGGAATCTAATCTCTTTCTTAATGGCTTAAGCTTCTATGATCAGCACAGAGACATGAGGCTGGACATTGATAACATGTCATACGAGGAACTGTTAGCTCTAGAAGATAGAATGGGAACTGTGAGCACGGCTATGACAGAAGAAGCATTAGCGCAATGCCTCCAGAGTAGCATCTATCAGCTTAGACCAGTAGAAGATACAGCTCTATGCTGTCGTGAGGATAAGGATGATGTTAAATGTTGCATCTGCCAGGAAGAGTATGCAATTGGAGATGAAATAGGGAAGCTACAATGCGAGCATAGCTTTCATCTTGTCTGTGTAAAACAGTGGCTAAGGCTAAAGAACTGGTGTCCCATCTGCAAAGCAACGGCGGGACCCACGTCAACTTCTCTGAGCCCTCACAATTCAGTTCTTTAG 1629 42.85 MDAYSGKRAANGVVASRKEFGLILKDRGNNRDRNGQFCNRLGCSGRLNSARGARGSYFEKSATPSFRASSNGKEIVGSSSRNSSTVSNPNKSIVGSHRKLSSGLETDSSETSSMQDEPEVTELIPPPQKIQKGLNLGSKSPHSSETVLLDGGSSSVASNVRSKRTYYNQRSGVRNHDTRVGSSASSISSKLPEQSTRAGKNLGLKSISDSIQLGSSSSSSDSNLTRRKEATNKNRNSEGESSSATKGKKTSWSSLEGRNTGYSYRISRSDSSGARNNIPPHRENGVASSVRTRRSVSGQNRSSRLTTESSLPLNEPPIMFSEISRPNISIDVNAPSSSRQLSSDLTSSHSDLTSSHSNGEVGLTCSYMNQGSFRHYNIDGIAEVLLALERIEQDEELTYEQVILLESNLFLNGLSFYDQHRDMRLDIDNMSYEELLALEDRMGTVSTAMTEEALAQCLQSSIYQLRPVEDTALCCREDKDDVKCCICQEEYAIGDEIGKLQCEHSFHLVCVKQWLRLKNWCPICKATAGPTSTSLSPHNSVL 542
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3811066 3815076 + Conep20aG0065200.1 Cone20ag0634 460538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0634 542 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 465 532 IPR013083 -
Cone20ag0634 542 FunFam E3 ubiquitin-protein ligase arkadia 446 530 - -
Cone20ag0634 542 SMART ring_2 484 524 IPR001841 -
Cone20ag0634 542 MobiDBLite consensus disorder prediction 236 278 - -
Cone20ag0634 542 MobiDBLite consensus disorder prediction 62 118 - -
Cone20ag0634 542 MobiDBLite consensus disorder prediction 133 225 - -
Cone20ag0634 542 MobiDBLite consensus disorder prediction 289 314 - -
Cone20ag0634 542 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 33 528 IPR045191 GO:0061630(InterPro)|GO:0061630(PANTHER)
Cone20ag0634 542 Pfam Ring finger domain 483 525 IPR001841 -
Cone20ag0634 542 MobiDBLite consensus disorder prediction 334 357 - -
Cone20ag0634 542 SUPERFAMILY RING/U-box 476 530 - -
Cone20ag0634 542 MobiDBLite consensus disorder prediction 26 317 - -
Cone20ag0634 542 ProSiteProfiles Zinc finger RING-type profile. 484 525 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0634 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0634 Cone-Chr20:3811066 Cone4ag1588 Cone-Chr4:12129337 2.98E-34 dispersed
Cone17ag1078 Cone-Chr17:8059314 Cone20ag0634 Cone-Chr20:3811066 2.61E-288 wgd
Cone20ag0634 Cone-Chr20:3811066 Cone4ag1858 Cone-Chr4:13328339 1.94E-88 wgd
Cone20ag0634 Cone-Chr20:3811066 Cone7ag1763 Cone-Chr7:11634254 3.16E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g154 . . Bda01g00638 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone4ag1697 . . Cone20ag0634 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000718 2 10 3 4 3 2 4 4 4 1 3 3 4 2 2 4 3 2 4 2 2 2 2 2 2 2 2 5 11 1 97