Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0635 | ATGGGAGACGACCGCAAGGGCGTCATGATCAGTCTCGAGGAGATAAAAAACGAGTCCGTTGATCTGGAACATATTCCGATCGAGGAGGTGTTTCAGCAGTTAAAATGCACGAAAGAAGGTCTCACGTCAGTGGAAGGAGTCGATCGGCTTCAAACCTTTGGACCCAACAAGCTGGAAGAGAAGAAGGAGAGCAAAGTTCTCAAGTTTCTGGGTTTTATGTGGAATCCTTTATCATGGGTCATGGAAGCGGCTGCTTTGATGGCTATAGGCTTGGCAAATGGCGATGGAGAGCCTCCGGACTGGCAGGATTTTGTAGGAATCATCGTCTTACTCGTCATTAACTCTACTATTAGTTTCATCGAAGAAAACAATGCCGGAAATGCTGCTGCAGCTCTAATGGCCGGTCTCGCTCCAAAAACTAAGGTTCTTAGAGATGGTCTCTGGAGTGAGAAAGATGCTGCAATTCTGGTTCCAGGAGACATAATCAACATTAAACTGGGAGATATAGTACCGGCTGATGCCCGTTTACTCGAAGGTGATCCTCTGAAGATCGACCAATCTGCACTAACTGGGGAATCTCTTCCTGTCACCAAGAACCCATCAGACGAGGTTTTTTCCGGTTCGACATGTAAACAGGGTGAAATTGAAGCAATTGTGATTGCCACTGGTGTGCACACATTCTTTGGTAAAGCTGCCCACTTAGTTGATAGCACCAATCAGGTCGGGCATTTCCAAAAGGTTCTTACCTCCATTGGTAATTTCTGCATTTGCTCTATAGCCATCGGAATAATTATTGAGATCATAGTTATGTACCCGATACAACATCGCAAGTACAGGGATGGAATCGACAATTTGCTGGTGCTTTTGATTGGAGGAATCCCAATTGCCATGCCAACTGTTTTGTCTGTCACTATGGCTATTGGTTCTCATAGGCTTTCTAAACAAGGTGCTATAACTAAGAGGATGACTGCTATAGAGGAAATGGCAGGCATGGATGTCCTTTGCAGTGATAAGACCGGAACCTTGACCTTGAACAAGCTAACTGTTGACAGGACCTTGGTTGAAGTGTTTGCAAACGGTGTGGAAAAAGACTATGCCGTCCTTCTTGCAGCGAGGGCTTCTAGGATAGAAAATCAAGATGCTATTGATGCTGCCATTATTGGAATGCTTGCAGATCCAAAGGAGGCACGAGCTGGAATTAGAGAGGTTCATTTTCTTCCATTTAATCCGGTAGATAAGAGGACTGCTTTGACATACATTGACTCTGATGGAAACTGGCATCGAGCTAGCAAAGGTGCTCCCGAGCAGATACTTGATCTTTGCAACTGTAATGAAGCTTTTAAAAGGGAGGTTATTTCTGTGATTGATAAATTTGCTGATCGTGGACTTCGATCTTTAGCCGTTGCAAGACAGCAAGTACCCGAGAAATCAAAAGACAGTCCGGGGGGACCTTGGGAGTTTATTGGTCTATTGCCTCTCTTTGATCCTCCTAGGTTAGATAGTGCAGAAACTATTAGAAGAGCTTTGAATCTGGGAGTGAATGTCAAGATGATTACAGGGGATCAACTCGCCATTGCCAAGGAGACTGGTCGTAGACTTGGTATGGGAACAAACATGCACCCTTCTTCTTCATTACTTGGTCAAAATAAGGATGCATCTGTTGCTCCCCTCTTGGATGAATTGATCGAAAAGGCCGATGGGTTTGCCGGAGTATTTCCAGAACACAAATATGAAATCGTGAAGAGGCTACAAGAACTAAAACACATTTGTGGAATGACTGGAGATGGTGTTAATGACGCCCCAGCACTAAAGAAGGCAGACATTGGAATTGCCGTAGCTGATGCTACTGATGCTGCTAGGAGTGCTTCAGATATTGTCCTCACTGAACCGGGGTTGAGTGTTATAATTAGTGCAGTACTGACCAGCCGAGCTATATTCCAAAGGATGAAGAACTACACTATCTATGCAGTTTCAATCACGATTCGTGTGGTGTTTGGCTTCATGTTCATTGCCTTGATTTGGAAATTTGATTTTTCACCCTTCATGGTTCTAATTATAGCCATATTAAATGACGGAACAATCATGACAATTTCGAAGGACTTAGTCAAGCCATCTCCACAGCCTGACAGTTGGAAACTGAATGAGATATTTGCTACCGGCATTGTGTTGGGAGGATACTTGGCATTAATGACCGTAATATTCTTCTGGGCAATGAACGATACCAACTTCTTCTCGAACATATTTGGTGTAAGATCATTGAGGAATAGACCTGAAGAAATGATGGGAGCTTTGTACCTTCAAGTTAGTATCATAAGCCAGGCCCTTATTTTTGTCACAAGATCACGAAGCTTGTCCTACCTTGAACGTCCCGGGCTTTTCCTAGTCTCTGCTTTCGTATTGGCTCAGCTGGTAGCAACGTTTATAGCAGTATATGCAAACTGGGGATTTGCCCGGATAAACGGAATGGGATGGGGGTGGGCCGGTGTCATCTGGCTATATAGTGTAATTACATATTTTCCCCTCGATTTCCTCAAATTTGCAATCCGGTATGCCCTAAGTGGCAAGGCTTGGGATACTCTCTTAGAGAACAAGACTGCTTTCACCACTAAGAAAAACTATGGCAAAGAAGAGAGACAAGCACAGTGGGCTGCTGCTCAGAGGACTCTCCATGGTCTTCAACCACTTGAATCCTCTAACATTTTCCCCGAGCAAAGTAGCTACCAGGAGCTTTCCGAGATCGCAGAACAAGCTAAGCGTCGGGCCGAGGTTGCTAGGCTTAGGGAAGTGAATACCTTGAAGGGTCATGTCGAATCGGTTGTTAAACTTAAAGGTCTGGATATTGATGCGATGCATCAACATTATACCGTTTAG | 2871 | 44.41 | MGDDRKGVMISLEEIKNESVDLEHIPIEEVFQQLKCTKEGLTSVEGVDRLQTFGPNKLEEKKESKVLKFLGFMWNPLSWVMEAAALMAIGLANGDGEPPDWQDFVGIIVLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLRDGLWSEKDAAILVPGDIINIKLGDIVPADARLLEGDPLKIDQSALTGESLPVTKNPSDEVFSGSTCKQGEIEAIVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTSIGNFCICSIAIGIIIEIIVMYPIQHRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSKQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDRTLVEVFANGVEKDYAVLLAARASRIENQDAIDAAIIGMLADPKEARAGIREVHFLPFNPVDKRTALTYIDSDGNWHRASKGAPEQILDLCNCNEAFKREVISVIDKFADRGLRSLAVARQQVPEKSKDSPGGPWEFIGLLPLFDPPRLDSAETIRRALNLGVNVKMITGDQLAIAKETGRRLGMGTNMHPSSSLLGQNKDASVAPLLDELIEKADGFAGVFPEHKYEIVKRLQELKHICGMTGDGVNDAPALKKADIGIAVADATDAARSASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRVVFGFMFIALIWKFDFSPFMVLIIAILNDGTIMTISKDLVKPSPQPDSWKLNEIFATGIVLGGYLALMTVIFFWAMNDTNFFSNIFGVRSLRNRPEEMMGALYLQVSIISQALIFVTRSRSLSYLERPGLFLVSAFVLAQLVATFIAVYANWGFARINGMGWGWAGVIWLYSVITYFPLDFLKFAIRYALSGKAWDTLLENKTAFTTKKNYGKEERQAQWAAAQRTLHGLQPLESSNIFPEQSSYQELSEIAEQAKRRAEVARLREVNTLKGHVESVVKLKGLDIDAMHQHYTV | 956 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 3823775 | 3829855 | - | Conep20aG0065300.1 | Cone20ag0635 | 460539 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0635 | 956 | Gene3D | - | 347 | 494 | IPR023299 | GO:0000166(InterPro) | |
| Cone20ag0635 | 956 | CDD | P-type_ATPase_H | 40 | 846 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cone20ag0635 | 956 | Coils | Coil | 907 | 927 | - | - | |
| Cone20ag0635 | 956 | Gene3D | - | 905 | 956 | - | - | |
| Cone20ag0635 | 956 | FunFam | ATPase 4 plasma membrane-type | 592 | 820 | - | - | |
| Cone20ag0635 | 956 | Gene3D | - | 332 | 630 | IPR023214 | - | |
| Cone20ag0635 | 956 | FunFam | Plasma membrane ATPase | 138 | 222 | - | - | |
| Cone20ag0635 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 593 | 612 | - | - | |
| Cone20ag0635 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 185 | 199 | - | - | |
| Cone20ag0635 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 511 | 521 | - | - | |
| Cone20ag0635 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 489 | 500 | - | - | |
| Cone20ag0635 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 335 | 349 | - | - | |
| Cone20ag0635 | 956 | PRINTS | P-type cation-transporting ATPase superfamily signature | 616 | 628 | - | - | |
| Cone20ag0635 | 956 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 21 | 852 | IPR023298 | - | |
| Cone20ag0635 | 956 | Pfam | E1-E2 ATPase | 137 | 315 | - | - | |
| Cone20ag0635 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 593 | 609 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone20ag0635 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 624 | 649 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone20ag0635 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 765 | 786 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone20ag0635 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 451 | 469 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone20ag0635 | 956 | PRINTS | H+-transporting ATPase (proton pump) signature | 565 | 581 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone20ag0635 | 956 | NCBIfam | plasma-membrane proton-efflux P-type ATPase | 40 | 811 | IPR006534 | GO:0008553(InterPro)|GO:0016020(InterPro)|GO:0120029(InterPro) | |
| Cone20ag0635 | 956 | SUPERFAMILY | Calcium ATPase, transduction domain A | 138 | 235 | IPR008250 | - | |
| Cone20ag0635 | 956 | Pfam | Cation transporter/ATPase, N-terminus | 24 | 87 | IPR004014 | - | |
| Cone20ag0635 | 956 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 23 | 880 | - | GO:0005886(PANTHER)|GO:0008553(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0051453(PANTHER)|GO:1902600(PANTHER) | |
| Cone20ag0635 | 956 | NCBIfam | HAD-IC family P-type ATPase | 568 | 682 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone20ag0635 | 956 | NCBIfam | HAD-IC family P-type ATPase | 107 | 354 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cone20ag0635 | 956 | FunFam | Plasma membrane ATPase | 488 | 641 | - | - | |
| Cone20ag0635 | 956 | SFLD | p-type atpase | 317 | 644 | IPR044492 | - | |
| Cone20ag0635 | 956 | Gene3D | - | 100 | 820 | - | - | |
| Cone20ag0635 | 956 | SUPERFAMILY | HAD-like | 331 | 640 | IPR036412 | - | |
| Cone20ag0635 | 956 | SFLD | C1.7: P-type atpase like | 317 | 644 | - | - | |
| Cone20ag0635 | 956 | FunFam | Plasma membrane ATPase | 347 | 494 | - | - | |
| Cone20ag0635 | 956 | Pfam | haloacid dehalogenase-like hydrolase | 331 | 607 | - | - | |
| Cone20ag0635 | 956 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 337 | 343 | IPR018303 | - | |
| Cone20ag0635 | 956 | Gene3D | - | 138 | 222 | - | - | |
| Cone20ag0635 | 956 | SMART | Cation_ATPase_N_a_2 | 21 | 93 | IPR004014 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0635 | Cone-Chr20:3823775 | Cone4ag0618 | Cone-Chr4:2846097 | 0 | dispersed | |
| Cone20ag0635 | Cone-Chr20:3823775 | Cone4ag1855 | Cone-Chr4:13314103 | 0 | wgd | |
| Cone20ag0635 | Cone-Chr20:3823775 | Cone7ag1759 | Cone-Chr7:11619413 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0635 | K01535 | - | csv:101213505 | 1607.04 |