Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0645 ATGCAATTCAAAACAGCCCAGTCTTCATTCAGGGATAGGACGCAGGAATTCCAAAGCGTAGCAGAGAGGCTAAATAAGTCTTACTCATCTGGAACTGGGCAAAACAGACCTAGTGGTTCAAAATCAGAGGAACAACGCTCTGCAATCGCGATTCAGTCTGAATTTAACAAGCGAGCTTCCAAGGTTGGGTATGGGATTCATCAAACATCTCAGAAACTTGCAAAATTGGCAAAGTTGGCAAAGAGGACTTCAGTTTTTGATGACCCTACTATGGAGATCCAGGAGCTGACAGCAGTTATCAAGCAGGATATTACTGCATTGAACTCTGAAGTAGTGGACCTTCAGCTCCTCTGCAACTCCAGAAATGACGGTGGAAACATTTCTACTGACACTACTAGTCATTCAACGACTGTTGTGGATGACTTAAAGAACCGATTGATGAGCACTACAAAAGCATTCAAGGAAGTACTGACCATGCGGACAGAGAACCTGAAGGTTCACGAAAATAGGAGACAGTTGTTTTTTACCTCCACTTCTAAGGATTCTACGAATCCTTTTGTTCGGCAGCGGCCACTAGCTTCCAGGTCAGCTGCTAGTGCCTCAAATGTACCCCCTCCATGGGCAGGGTCAGCATCTTTGTCTCAAGCATCTTCTAGCAAGCATTTGGATGGGGAGAGTCAGCCACTGCTTCAGGCACAGCAGCAGCAACAACAGCAACTAGTTCCATTGCAAGACAGTTACATGCAGAGCAGGGCTGAAGCTCTTCAAAATGTTGAGTCCACTATTCATGAGTTGGGCAGCATCTTTAACCAGCTAGCAACCCTGGTTTCTCAGCAAGGAGAAATTGCTATCAGGATTGATGAGAACATGGATGACACTTTATCAAATGTGGAGGGAGCACAAGGGGCCCTGCTCAAGTATCTCAACAGCATATCGTCGAACAGATGGTTGTCATTAGTTGTTGACTTCTTGTATCTGCCCATACCAGATGCTTCGAACGAGATCTCGAATGGAGGTCTCGTTTCAAGCTTCGAACCAGATCTCAAACGGAGGTATGGTCTCTTTTTGTTTCCATCTTCTTAA 1083 45.34 MQFKTAQSSFRDRTQEFQSVAERLNKSYSSGTGQNRPSGSKSEEQRSAIAIQSEFNKRASKVGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSEVVDLQLLCNSRNDGGNISTDTTSHSTTVVDDLKNRLMSTTKAFKEVLTMRTENLKVHENRRQLFFTSTSKDSTNPFVRQRPLASRSAASASNVPPPWAGSASLSQASSSKHLDGESQPLLQAQQQQQQQLVPLQDSYMQSRAEALQNVESTIHELGSIFNQLATLVSQQGEIAIRIDENMDDTLSNVEGAQGALLKYLNSISSNRWLSLVVDFLYLPIPDASNEISNGGLVSSFEPDLKRRYGLFLFPSS 360
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3923629 3925835 + Conep20aG0066500.1 Cone20ag0645 460549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0645 360 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Cone20ag0645 360 MobiDBLite consensus disorder prediction 175 235 - -
Cone20ag0645 360 PANTHER SYNTAXIN 55 315 IPR045242 GO:0000139(PANTHER)|GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006888(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cone20ag0645 360 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cone20ag0645 360 SMART tSNARE_6 240 307 IPR000727 -
Cone20ag0645 360 FunFam Syntaxin-32 like 49 300 - -
Cone20ag0645 360 MobiDBLite consensus disorder prediction 21 46 - -
Cone20ag0645 360 Pfam SNARE domain 281 317 IPR000727 -
Cone20ag0645 360 Gene3D - 50 300 - -
Cone20ag0645 360 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Cone20ag0645 360 SUPERFAMILY t-snare proteins 53 300 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cone20ag0645 360 CDD SNARE_syntaxin5 248 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0645 Cone-Chr20:3923629 Cone5ag0210 Cone-Chr5:884831 3.47E-81 dispersed
Cone17ag1057 Cone-Chr17:7945526 Cone20ag0645 Cone-Chr20:3923629 8.40E-190 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0645 K08490 - mdm:108169431 446.047