Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0656 ATGGAGGACAGTAAAGGAGGAGGTAATGCTGCTAACGGAAGCTGCTCAAATGAGGGTCGGCCTCCGAATCCACTCGCTTCTGCTTATCGGCAATGTTATAGTACTGATCGAGCTACTACTGCGCTGCCTAAGAAATCGCTTGTTCGCCATCCCTCTCTAATGAAGACAAATACCTTGGATGTCTCTGGTAACCCTGGACTAGATATAGAGGACCATGAGTCTGATTTCATTCCGATTATACGCTCTGGAGCATCATCTGACATTGGATTCCGTACAAAAATGGAAGATGTGTATGTTTGTGTTGACAGTTTAACGGGTGATAATGGGCTCAAGAATCTTTCTGAAGGGCCTAGTGCCTTCTACGGGGTATTTGATGGCCATGGAGGAAAACATGCTGCAGATTTTGCCTGTTATCATCTACCAAAATTCATCATTGAAGATGAATATTTCCCTACTGATATAGAGAGGATTATTTCCTCAGCATTTCTCCAGACCGATACTGCCTTTGCTGAAGCTTGCTCCTTAGACTCAACCCTTTCTTCTGGAACCACAGCATTAGCAGCTGTGGTTCTTGGAAGGTCATTAGTGGTGGCAAATGCTGGAGATTGCCGAGCAGTTTTATGCCGTCGTGGAAAAGCAATTGAGATGTCAAGGGATCATAAACCTGTTTGTGTTAAAGAAAGGAAACGTATTGAATCATCTGGAGGGTATGTTTACGATGGGTACCTAAACGGGCAACTAAATGTGGCCCGGGCTTTGGGTGATTGGCACTTGGAAGGAATGAAAGCCCAAGATGATGGCCCATTAAGTGCAGAGCCCGAGCTTATGACCAGAAAACTAACTGAAGAAGATGAGTTTCTCATAATCGGATGTGATGGGATCTGGGATGTGTTTAGGAGTCAAAATGCTGTGGATTTTGCTCGAAGGAGGCTCCAAGAACATAATGACCCTGTAATGTGTAGCAGGGATTTGATTGACGAGGCTTTGAAGAGGAAGAGTGGGGACAATTTAGCTGTTGTAGTGGTCTGTTTTCAGTCTCAGCCTCCTCCTAATTTGGTTCTTCCCCGCACTAGAGTTCATAGGAGCTTTTCGGCTGAAGGATTGAGAGAGTTGCAAGGCTTTCTGGATAGCTTGGGAAACTGA 1143 45.06 MEDSKGGGNAANGSCSNEGRPPNPLASAYRQCYSTDRATTALPKKSLVRHPSLMKTNTLDVSGNPGLDIEDHESDFIPIIRSGASSDIGFRTKMEDVYVCVDSLTGDNGLKNLSEGPSAFYGVFDGHGGKHAADFACYHLPKFIIEDEYFPTDIERIISSAFLQTDTAFAEACSLDSTLSSGTTALAAVVLGRSLVVANAGDCRAVLCRRGKAIEMSRDHKPVCVKERKRIESSGGYVYDGYLNGQLNVARALGDWHLEGMKAQDDGPLSAEPELMTRKLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSRDLIDEALKRKSGDNLAVVVVCFQSQPPPNLVLPRTRVHRSFSAEGLRELQGFLDSLGN 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 3995828 3998567 + Conep20aG0067600.1 Cone20ag0656 460560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0656 380 Gene3D - 69 348 IPR036457 -
Cone20ag0656 380 PANTHER PROTEIN PHOSPHATASE 2C 59 345 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cone20ag0656 380 MobiDBLite consensus disorder prediction 1 27 - -
Cone20ag0656 380 CDD PP2Cc 80 344 IPR001932 -
Cone20ag0656 380 Pfam Protein phosphatase 2C 85 336 IPR001932 -
Cone20ag0656 380 SMART PP2C_4 71 342 IPR001932 -
Cone20ag0656 380 FunFam Probable protein phosphatase 2C 22 67 347 - -
Cone20ag0656 380 SUPERFAMILY PP2C-like 75 346 IPR036457 -
Cone20ag0656 380 ProSitePatterns PPM-type phosphatase domain signature. 120 128 IPR000222 GO:0043169(InterPro)
Cone20ag0656 380 ProSiteProfiles PPM-type phosphatase domain profile. 81 344 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0433 Cone-Chr16:6701050 Cone20ag0656 Cone-Chr20:3995828 1.91E-126 dispersed
Cone20ag0656 Cone-Chr20:3995828 Cone8ag0907 Cone-Chr8:8797371 1.21E-115 dispersed
Cone17ag1044 Cone-Chr17:7876242 Cone20ag0656 Cone-Chr20:3995828 5.15E-267 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45615 PF02204 VPS9 1.80E-28 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0656 K14803 - vvi:100256157 600.897