Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0657 ATGTCTCGTCACCTTCTCCTTTCTCCTCCACAAAGATTTATCAGATCAAGAGAAGTCGAGGCCGATTGGGATTTGGGGGAAATCTTCAAATCAAAGCCAAGCCCAGGAGTCGATTGGAAGCGATCAGGACCTCTCGCGGCTCTAGTCATGTCGGCCTCAGCTCCGGTGGGAGATCCGAGCTCTTGGGCTCGTGCTCTTGTCCGGATCTCTCCCTACACCTTCTCTGCAATTGGTATCGCCGTCGCTATTGGAGTTTCCGTTCTCGGCGCTGCCTGGGGGATTTACATAACTGGAAGCAGTTTGATCGGCGCTGCAATTAAAGCTCCCCGCATTACTTCGAAGAACTTAATCAGTGTAATTTTCTGCGAAGCAGTTGCAATATACGGCGTCATTGTAGCCATCATTCTACAAACCAAGTTAGAGAGTGTTCCAGCATCTCAGATCTATGATCCTGCATCTCTCAGAGCAGGATATTCAATCTTTTGCTCTGGAATCATAGTGGGCTTTGCAAACCTTTTCTGCGGACTGTGTGTAGGCATTATCGGTAGCAGCTGTGCATTATCCGATGCTCAGAACTCCAGTCTTTTCGTGAAGATTCTTGTGATCGAGATCTTCGGCAGTGCACTTGGGTTGTTCGGAGTGATTGTTGGCATAATCATGTCGGCTCAAGCTACATGGCCTGCAAAAGCAGGATGA 696 48.71 MSRHLLLSPPQRFIRSREVEADWDLGEIFKSKPSPGVDWKRSGPLAALVMSASAPVGDPSSWARALVRISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYDPASLRAGYSIFCSGIIVGFANLFCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKAG 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4002259 4004514 + Conep20aG0067700.1 Cone20ag0657 460561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0657 231 SUPERFAMILY F1F0 ATP synthase subunit C 70 139 IPR035921 -
Cone20ag0657 231 CDD ATP-synt_Vo_c_ATP6F_rpt2 156 220 - -
Cone20ag0657 231 FunFam V-type proton ATPase proteolipid subunit 72 227 - -
Cone20ag0657 231 Pfam ATP synthase subunit C 162 220 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone20ag0657 231 Pfam ATP synthase subunit C 77 136 IPR002379 GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro)
Cone20ag0657 231 PRINTS Vacuolar ATP synthase 16kDa subunit signature 90 114 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0657 231 PRINTS Vacuolar ATP synthase 16kDa subunit signature 172 198 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0657 231 PRINTS Vacuolar ATP synthase 16kDa subunit signature 199 222 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0657 231 PRINTS Vacuolar ATP synthase 16kDa subunit signature 116 140 IPR000245 GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0657 231 SUPERFAMILY F1F0 ATP synthase subunit C 154 221 IPR035921 -
Cone20ag0657 231 CDD ATP-synt_Vo_c_ATP6F_rpt1 74 136 - -
Cone20ag0657 231 Gene3D - 72 227 IPR035921 -
Cone20ag0657 231 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 60 224 - GO:0016021(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1042 Cone-Chr17:7864653 Cone20ag0657 Cone-Chr20:4002259 9.01E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0657 K03661 - rcu:8284846 316.235