Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0657 | ATGTCTCGTCACCTTCTCCTTTCTCCTCCACAAAGATTTATCAGATCAAGAGAAGTCGAGGCCGATTGGGATTTGGGGGAAATCTTCAAATCAAAGCCAAGCCCAGGAGTCGATTGGAAGCGATCAGGACCTCTCGCGGCTCTAGTCATGTCGGCCTCAGCTCCGGTGGGAGATCCGAGCTCTTGGGCTCGTGCTCTTGTCCGGATCTCTCCCTACACCTTCTCTGCAATTGGTATCGCCGTCGCTATTGGAGTTTCCGTTCTCGGCGCTGCCTGGGGGATTTACATAACTGGAAGCAGTTTGATCGGCGCTGCAATTAAAGCTCCCCGCATTACTTCGAAGAACTTAATCAGTGTAATTTTCTGCGAAGCAGTTGCAATATACGGCGTCATTGTAGCCATCATTCTACAAACCAAGTTAGAGAGTGTTCCAGCATCTCAGATCTATGATCCTGCATCTCTCAGAGCAGGATATTCAATCTTTTGCTCTGGAATCATAGTGGGCTTTGCAAACCTTTTCTGCGGACTGTGTGTAGGCATTATCGGTAGCAGCTGTGCATTATCCGATGCTCAGAACTCCAGTCTTTTCGTGAAGATTCTTGTGATCGAGATCTTCGGCAGTGCACTTGGGTTGTTCGGAGTGATTGTTGGCATAATCATGTCGGCTCAAGCTACATGGCCTGCAAAAGCAGGATGA | 696 | 48.71 | MSRHLLLSPPQRFIRSREVEADWDLGEIFKSKPSPGVDWKRSGPLAALVMSASAPVGDPSSWARALVRISPYTFSAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVIFCEAVAIYGVIVAIILQTKLESVPASQIYDPASLRAGYSIFCSGIIVGFANLFCGLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPAKAG | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 4002259 | 4004514 | + | Conep20aG0067700.1 | Cone20ag0657 | 460561 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0657 | 231 | SUPERFAMILY | F1F0 ATP synthase subunit C | 70 | 139 | IPR035921 | - | |
Cone20ag0657 | 231 | CDD | ATP-synt_Vo_c_ATP6F_rpt2 | 156 | 220 | - | - | |
Cone20ag0657 | 231 | FunFam | V-type proton ATPase proteolipid subunit | 72 | 227 | - | - | |
Cone20ag0657 | 231 | Pfam | ATP synthase subunit C | 162 | 220 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cone20ag0657 | 231 | Pfam | ATP synthase subunit C | 77 | 136 | IPR002379 | GO:0015078(InterPro)|GO:0033177(InterPro)|GO:1902600(InterPro) | |
Cone20ag0657 | 231 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 90 | 114 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0657 | 231 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 172 | 198 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0657 | 231 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 199 | 222 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0657 | 231 | PRINTS | Vacuolar ATP synthase 16kDa subunit signature | 116 | 140 | IPR000245 | GO:0033179(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro) | |
Cone20ag0657 | 231 | SUPERFAMILY | F1F0 ATP synthase subunit C | 154 | 221 | IPR035921 | - | |
Cone20ag0657 | 231 | CDD | ATP-synt_Vo_c_ATP6F_rpt1 | 74 | 136 | - | - | |
Cone20ag0657 | 231 | Gene3D | - | 72 | 227 | IPR035921 | - | |
Cone20ag0657 | 231 | PANTHER | V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT | 60 | 224 | - | GO:0016021(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag1042 | Cone-Chr17:7864653 | Cone20ag0657 | Cone-Chr20:4002259 | 9.01E-119 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0657 | K03661 | - | rcu:8284846 | 316.235 |