Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0669 ATGATCCATTATCAAATCCTCAGCTTCCTAAAAATATCGAACCAACGTAAGCAGATCAGGGCGTCCAGAATGTACGCCACGATAGATCTGGGAAAAGCAAGAGTCGGAAGAACAAGAATGGTAGATCAACCTTCACAGCCACAATGGAACGAACATTTCCGAATCTACTGTGCGCATTTGATCTCTAACGTGATCTTCACAGTCAAAGATGACGATATTATTGGAGCAACCCTAATCGGACGAGCATGCATGCCCGTAGAAGAAATCATAGGCGGGTGCGTGGTAGAAAAATTTATTCCAATTCTCGATGAAGATCATAACCCTACCGAAGGCGGTTTAATACTCCACGTCAAACTGCAGTTTCAAAGCGTCATCTATGACCCCAATTCAAACTGGTCTCAAGGAATCAAAAGTCCTCTATTTCCGGGAGTTCCGCGCACGTTTTTTAATCAAAGATCGGGTAATATAGTTTCTCTTTATCAAGACGCTCATGTTTTGGACAACTCGATTACACCTAACATGCTTTCTGAAGGAAGATATAGAGAGGTTAATAAGTGTTGGAAAGATATCTTTGATGCGATTTCTAATGCGAAATACTTGGTGTATATAACGGGGTGGTCCGTAGGTGCTAACATTAAGTTAATTAGAGATTTAAACCGGCCTAGACCGGGCGGAGATGTAACACTTGGAGAGCTTTTGAAGAAGAAAGCTAATGTGGATGGTGTGACCGTTCTCTTACTTGTTTGGGATGATAGAACTTCCCTTAAAGAATTCAAAAAGGACGGTTTGATGGCAACTCATAATCAAGAAGCTGCGGATTATTTTCAAAACTCGAAAGTGAAGTGCGTGTTGTGTCCTCGCAATCCGGACGGTGGGAGAAGCATCATTCAAGGGTTCGAGGTTGCCGCAATGTTTACTCACCATCAAAAAACGGTAGTCGTGGATAGTGAAGTTCCAGGCGGAGGAAGTCCAGAAAAGAAGAGACGGATCGTAAGTTTTGTGGGAGGAATTGATCTTTGTGACGGAAGATATGATACACCAGAACATCCACTTTTTTCAAGTCTGGATATAGTTCATCGCCATGATTTTCATCAACCGAATTTTCCGAACTCCTCAATCAATAAAGGCGGTCCGAGAGAACCGTGGCATGACATACATTGCCGCCTGGATGGCCCAGTTGCATGGGACGTGCTATACAATTTCGAGCAAAGGTGGTTGAACGAAGTGGGGACTTCTTCACTAATTCCGTCAGAGAAACTTGACAAAATCATAACTCGCCCATCGAAAGTTCTTTTCCCGAATGATCCCGAGACATGGAACGTTCAAATATTCCGATCAATAGACGGTGGGGCTGCTATGGGTTTTCCTACAAACCCCGAAGAAGCGATCCATTACGGGGTTGTTAGTGGGAAAGATAATGTAATCGATAGAAGCATACAAGATGCGTATATCAATGCGATTAGGAGAGCAAAGGATTTTATATACATTGAGAACCAATATTTTCTTGGAAGCTCGTTTGGGTGGAATCAATCCGGCATTATTAGAGATGATGACATTAATGCTTGGCATTTGATCCCGAAAGAACTCTCGCTTAAGATAGTAAGAAAAATCGAAGCCGGAGAGAGGTTTTCAGTTTACATCGTCATACCCATGTGGCCGGAAGGCATACCGGAGAGTGGCTCCGTTCAGGCTATTTTGGACTGGCAACGAAGAACAATGGAGATGATGTACAGTGATATCACTAAAGCTCTTCAAAGAAAGGGACTTGATTCTACAAATCCTAAAGATTATCTCTCGTTTTTTTGTTTGGGGAGTAGGGAGAGTCGAAAAGACGGAGAATATGCACCGACCAAAAAACCTGAGTTAGATTCAGACTATATGGAAGCTCAAAAAGCCCGACGGTTCATGATATATGTTCATTCCAAATTGATGATAGTGGATGATGAGTATATAATCATCGGATCGGCCAATATAAACCAGAGATCGATGGACGGGGCAAGAGACTCGGAGATAGCAATGGGAGCATTCCAACCGTACCACTTATCGATGCCTCAGAAGCGAGCCAAGGGTGAGATCTACGGGTTCAGAACGGCATTATGGTACGAGCACCTCCACAAGGTAGACCAAAATTTCGATCGTCCAGAATCTCCAGAATGTATTCAGCTCGTCAACAAGCTTGCCCTTGATGCTTGGAACAATTACATAGAAAATAAGGAGCCACTCAACGTTGATCTTCCTCATCATTTGCTTCCTTATCCCATTGAAGTGACCAAAAGTGGAGAGATTACTTCTCTTCCCGGGTTTGAGTTTTTCCCTGATACAAAGGCAAAAGGTTCCGATTTGGGAATCTCTGCTTCGACGTCTGTAAATGTTAAACTTCGACCTTGTTCAACTTCCTCTTTGGCTGCGTCAGATTCTCGCCTGCATGGGAGCAGAGGCTGTCTTGGATGCTGCACTACACCTCCACTAGTTATAGTGGTGGATAATCCTTCTAAAGGACTACGAGCCCAAGCACAAACAGCCAAACATCCCGAAGATTTCTGGAGCTCTAGCACTTATGACATGGACAATAGTACGGTTCAGTCCAGTGTCTCAAACCAAACCCTTGATCCTAGCAGTAGCAGTAGCAATCCTCCAGAATTTGTGAACCATGGACTTCTTCTCTGGAACGAGACAAGGCAGCAATGGCTTCAAAAGAAAACATCTCATAGAGAGACCCAATCATGGGAACCCAGAATAAGCTTCAATGCAAGCTATGAGAGTTTACTTGGGACCAATAAGCGTTTTACTCGCCCCATACCGCTTCCTGAAATGACTGATTTTCTTGTTGATATTTGGGAGCAGGAGGGTTTATATGATTAA 2862 43.47 MIHYQILSFLKISNQRKQIRASRMYATIDLGKARVGRTRMVDQPSQPQWNEHFRIYCAHLISNVIFTVKDDDIIGATLIGRACMPVEEIIGGCVVEKFIPILDEDHNPTEGGLILHVKLQFQSVIYDPNSNWSQGIKSPLFPGVPRTFFNQRSGNIVSLYQDAHVLDNSITPNMLSEGRYREVNKCWKDIFDAISNAKYLVYITGWSVGANIKLIRDLNRPRPGGDVTLGELLKKKANVDGVTVLLLVWDDRTSLKEFKKDGLMATHNQEAADYFQNSKVKCVLCPRNPDGGRSIIQGFEVAAMFTHHQKTVVVDSEVPGGGSPEKKRRIVSFVGGIDLCDGRYDTPEHPLFSSLDIVHRHDFHQPNFPNSSINKGGPREPWHDIHCRLDGPVAWDVLYNFEQRWLNEVGTSSLIPSEKLDKIITRPSKVLFPNDPETWNVQIFRSIDGGAAMGFPTNPEEAIHYGVVSGKDNVIDRSIQDAYINAIRRAKDFIYIENQYFLGSSFGWNQSGIIRDDDINAWHLIPKELSLKIVRKIEAGERFSVYIVIPMWPEGIPESGSVQAILDWQRRTMEMMYSDITKALQRKGLDSTNPKDYLSFFCLGSRESRKDGEYAPTKKPELDSDYMEAQKARRFMIYVHSKLMIVDDEYIIIGSANINQRSMDGARDSEIAMGAFQPYHLSMPQKRAKGEIYGFRTALWYEHLHKVDQNFDRPESPECIQLVNKLALDAWNNYIENKEPLNVDLPHHLLPYPIEVTKSGEITSLPGFEFFPDTKAKGSDLGISASTSVNVKLRPCSTSSLAASDSRLHGSRGCLGCCTTPPLVIVVDNPSKGLRAQAQTAKHPEDFWSSSTYDMDNSTVQSSVSNQTLDPSSSSSNPPEFVNHGLLLWNETRQQWLQKKTSHRETQSWEPRISFNASYESLLGTNKRFTRPIPLPEMTDFLVDIWEQEGLYD 953
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4089484 4095003 + Conep20aG0069000.1 Cone20ag0669 460573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0669 953 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 303 343 IPR001736 GO:0003824(InterPro)
Cone20ag0669 953 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 635 662 IPR001736 GO:0003824(InterPro)
Cone20ag0669 953 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 19 104 IPR035892 -
Cone20ag0669 953 SMART pld_4 303 343 IPR001736 GO:0003824(InterPro)
Cone20ag0669 953 SMART pld_4 635 662 IPR001736 GO:0003824(InterPro)
Cone20ag0669 953 FunFam Phospholipase D 446 681 - -
Cone20ag0669 953 Pfam Phospholipase D Active site motif 637 662 IPR001736 GO:0003824(InterPro)
Cone20ag0669 953 Pfam Phospholipase D Active site motif 304 343 IPR001736 GO:0003824(InterPro)
Cone20ag0669 953 PANTHER PHOSPHOLIPASE D 14 778 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cone20ag0669 953 Gene3D Endonuclease Chain A 169 429 - -
Cone20ag0669 953 FunFam Phospholipase D delta 177 423 - -
Cone20ag0669 953 SUPERFAMILY Phospholipase D/nuclease 479 674 - -
Cone20ag0669 953 SUPERFAMILY Phospholipase D/nuclease 131 415 - -
Cone20ag0669 953 Gene3D Endonuclease Chain A 449 675 - -
Cone20ag0669 953 PIRSF PLD_plant 3 788 IPR011402 GO:0004630(InterPro)|GO:0005509(InterPro)|GO:0016020(InterPro)|GO:0046470(InterPro)
Cone20ag0669 953 Pfam C2 domain 19 97 IPR000008 -
Cone20ag0669 953 CDD C2_plant_PLD 21 121 - -
Cone20ag0669 953 Gene3D C2 domain 4 130 IPR035892 -
Cone20ag0669 953 Pfam Phospholipase D C terminal 708 777 IPR024632 -
Cone20ag0669 953 ProSiteProfiles C2 domain profile. 1 99 IPR000008 -
Cone20ag0669 953 SMART C2_3c 9 98 IPR000008 -
Cone20ag0669 953 MobiDBLite consensus disorder prediction 859 880 - -
Cone20ag0669 953 Pfam Gag1-like, clamp domain 851 953 IPR025124 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone16ag0647 Cone-Chr16:7992721 Cone20ag0669 Cone-Chr20:4089484 1.33E-22 dispersed
Cone17ag0220 Cone-Chr17:1050476 Cone20ag0669 Cone-Chr20:4089484 1.51E-21 dispersed
Cone17ag1023 Cone-Chr17:7795482 Cone20ag0669 Cone-Chr20:4089484 0 dispersed
Cone20ag0669 Cone-Chr20:4089484 Cone2ag0364 Cone-Chr2:1923354 0 dispersed
Cone17ag1022 Cone-Chr17:7788517 Cone20ag0669 Cone-Chr20:4089484 2.87E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0669 K01115 - csv:101207900 1072.0