Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0673 ATGCTTATTCCATCGCCGTTTTCTCTTATCTCCGCTCTCGTTCTCTGCCTTCCATTCGCCATTCTCTTCACCCTCAACAGCCCCTCTCCCGCCATCGATAGTAGCACTTCGGATATTCTACAAGTTATCTCTGTTTCTATTCCACCGCCATCGCCTCCTCCTCCGGCTCTGCTTCCACCATCACCTCTGCCAGAAGACGATGAGTCGCTGCTCCGTCTCGCCTCGAAAGTGAATCCGAAACCTTCGCCGCCAGGTAGTCCGAAGAAAGTAGCATTCAACTTTCTGACAACCTCTCCACTTCCATTTGCTCCGGTATGGGAGCTCTACTTCGACAAAATCCCGGCGGACTGGTTCAATATCTACATCCACGCCGATCCGAATTACAACTACAGCGACTCGGCTTTCACTGGCGTGTTCGCTCACCGAGTGATTCATTCCAAACCGGCTAGCCGTTTCTCCCCCACTCTTACCTCCGCCGCACGTCGTTTGCTGGCACACGCGCTGCTGCACGATCCGTCTAATTACATGTTTGCCCTCCTCTCTCCCTCTTGTATCCCTCTCCACTCTTTCAACTTTACTTACAAAACGCTGATTCGCTCGAAGAAGAGCTTCATCGAGATTCTTAAAAATGAGGGTGGGGCCCGTGGGAGGTGGGCGGCACGTGGGGACGAAGTAATGCTACCCGAGGTTAAGTTGGAGGATTTCCGGATTGGGTCCCAGTTTTGGGTTTTGACACGTAAGCACGCGAGACTCTCAGTCAAAGACCGGACGCTTTGGTCAAAGTTCAAGCTGCCATGTGTGCACAAGTACACATGTTACCCGGAGGAGAATTACTTTCCTACTCTACTCAGCATGCGGGACCCACGAGGGATTGTTCCCGCCACCCTTACACACGTGGACTGGAGGGGTAGCCACGATGGACACCCTCGTATGTACGGCGGATCAGAGGTGAGTCCCGATCTCATTCGGGCTTTACGGAGCGATAGGCCTAGGTACGGTGATGACGACGACGGATCGGACGGACTAAATTCGTCAGTGACGACAAGACGTCACGACCCCTTCTTGTTTGCGAGAAAATTCTCTGCGGCTGCAATCCAGCCGTTGATGAGCATAGCTGATGACGTCATCTTTAAAGATTCATAA 1143 52.58 MLIPSPFSLISALVLCLPFAILFTLNSPSPAIDSSTSDILQVISVSIPPPSPPPPALLPPSPLPEDDESLLRLASKVNPKPSPPGSPKKVAFNFLTTSPLPFAPVWELYFDKIPADWFNIYIHADPNYNYSDSAFTGVFAHRVIHSKPASRFSPTLTSAARRLLAHALLHDPSNYMFALLSPSCIPLHSFNFTYKTLIRSKKSFIEILKNEGGARGRWAARGDEVMLPEVKLEDFRIGSQFWVLTRKHARLSVKDRTLWSKFKLPCVHKYTCYPEENYFPTLLSMRDPRGIVPATLTHVDWRGSHDGHPRMYGGSEVSPDLIRALRSDRPRYGDDDDGSDGLNSSVTTRRHDPFLFARKFSAAAIQPLMSIADDVIFKDS 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4129061 4130203 + Conep20aG0069400.1 Cone20ag0673 460577

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0673 380 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 28 373 IPR044174 GO:0016757(InterPro)
Cone20ag0673 380 Pfam Core-2/I-Branching enzyme 90 325 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0673 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1427 Cone-Chr11:10198842 Cone20ag0673 Cone-Chr20:4129061 1.03E-85 dispersed
Cone18ag0163 Cone-Chr18:851890 Cone20ag0673 Cone-Chr20:4129061 1.14E-83 dispersed
Cone1ag0387 Cone-Chr1:3371845 Cone20ag0673 Cone-Chr20:4129061 3.30E-85 dispersed
Cone20ag0673 Cone-Chr20:4129061 Cone5ag1313 Cone-Chr5:7592745 8.60E-86 dispersed
Cone20ag0673 Cone-Chr20:4129061 Cone4ag1782 Cone-Chr4:12993528 7.21E-173 wgd
Cone20ag0673 Cone-Chr20:4129061 Cone7ag1696 Cone-Chr7:11314089 6.03E-32 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g488 . . Bda01g00748 . . Bpe02g00560 . . Cmo05g00380 Cmo12g00291 . Cma05g00379 . Car12g00323 Sed03g1616 Cpe07g00300 . Bhi04g00944 Tan02g2729 Cmetu03g0580 . Hepe10g0245 . Lcy13g1795 . . . . . . . Cone4ag1782 Cone7ag1697 . Cone20ag0673 . . . Cme03g01610 . . . . . . . . . . . . Cma12g00342 . Car05g00322 Cpe11g00324 . . . . . . . . Cla08g01339 Cam08g1801 Cec08g1380 Cco08g1508 Clacu08g1495 . Cre08g1282 Lsi08g01210 . Chy03g01115 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008502 1 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 35