Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0681 ATGACAGTGAAATTTCACGAAGAAGGTACTAGTCATCAAGTTCACAATCCAACGTACCAGAAGGAAGGGGGGAAAGACGAAGTTGGAATGGAGCTATATCCGACTGGGTCTAGTTTGCCGGACTGCTCGCATGCATGTGGGCCATGCTTTCCATGCAAGAGGGTAATGGTGAGCTTCAAGTGCTCCGTTTCAGAGTCTTGCCCAACTGTTTACAGATGCTTGTGTAAGGGAAAATACTACCATGTGCCGTCCAACTGA 258 47.67 MTVKFHEEGTSHQVHNPTYQKEGGKDEVGMELYPTGSSLPDCSHACGPCFPCKRVMVSFKCSVSESCPTVYRCLCKGKYYHVPSN 85
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4202925 4203744 + Conep20aG0070200.1 Cone20ag0681 460585

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0681 85 PANTHER EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4 20 81 IPR039455 GO:0010052(PANTHER)|GO:0010374(InterPro)
Cone20ag0681 85 Pfam Epidermal patterning factor proteins 35 82 - -
Cone20ag0681 85 MobiDBLite consensus disorder prediction 1 27 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0681 K20729 - - csv:101215276 140.584
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1333 Cone-Chr10:10410600 Cone20ag0681 Cone-Chr20:4202925 1.74E-19 dispersed
Cone20ag0681 Cone-Chr20:4202925 Cone3ag1405 Cone-Chr3:32918445 2.29E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1305 . . . . . . . . . Cmo15g00558 . . . . . . . . . . . . . . . . . . . . . . . . Cone20ag0681 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014165 0 1 0 0 1 1 1 1 1 0 1 1 1 1 1 1 1 1 0 0 0 1 0 0 1 1 1 2 1 1 22