Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0682 ATGTCCGCCAGCGCCGCCGCTAGCTATGCCTCCGCGCTAGCCGACGTGGCCAAATCCAACAATACTCTCGACTCGACCAGCGCCGACGTTGAGAAGATCGACAAGTTCTTCTCTGAGCCGGAGGTTTACGATTTCTTCTCAAACCCAACCATCGACCTCAAGAAGAAGCGGAAAGTGCTCGACGAGATTGCGTCATCGACAAAACTCCATCCGCAAACGATGAATTTCCTCAACATCCTGGTCGACTCGAAGAGGATCGATCAGATCAAGGAGATCGTGTCGGAGTTCGATATCGTGTATAATAAATTGACCGACACGGAGTTGGCGGTGGTGAGCTCGATAGTGGCGCTGGAGTCGCAGCACCTGGCTCAGATAGCGAAGCAGGTCCAAAAGTTGACCGGCGGGAAGAACGTGAGGATTAAGATAGTGATCGAGCCAAGCCTGGTGGCTGGATTCACTGTTAGGTTTGGGGATTCAGGATCGAAGCTGATTGATTTGAGCGTGAAGAAACAGCTTGAGGAAATTGCTACTCAGCTTGATCCTGGTGATATCCAGCTCAATGTATGA 567 51.32 MSASAAASYASALADVAKSNNTLDSTSADVEKIDKFFSEPEVYDFFSNPTIDLKKKRKVLDEIASSTKLHPQTMNFLNILVDSKRIDQIKEIVSEFDIVYNKLTDTELAVVSSIVALESQHLAQIAKQVQKLTGGKNVRIKIVIEPSLVAGFTVRFGDSGSKLIDLSVKKQLEEIATQLDPGDIQLNV 188
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4212310 4213086 - Conep20aG0070300.1 Cone20ag0682 460586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0682 188 PANTHER ATP SYNTHASE DELTA CHAIN 2 179 IPR000711 GO:0009535(PANTHER)|GO:0009772(PANTHER)|GO:0009773(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro)
Cone20ag0682 188 PRINTS ATP synthase delta subunit signature 5 24 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone20ag0682 188 PRINTS ATP synthase delta subunit signature 85 99 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone20ag0682 188 PRINTS ATP synthase delta subunit signature 136 151 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone20ag0682 188 PRINTS ATP synthase delta subunit signature 154 172 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone20ag0682 188 PRINTS ATP synthase delta subunit signature 74 85 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone20ag0682 188 Pfam ATP synthase delta (OSCP) subunit 6 179 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone20ag0682 188 SUPERFAMILY N-terminal domain of the delta subunit of the F1F0-ATP synthase 5 104 IPR026015 -
Cone20ag0682 188 NCBIfam ATP synthase F1 subunit delta 6 179 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone20ag0682 188 Hamap ATP synthase subunit delta [atpD]. 1 181 IPR000711 GO:0015986(InterPro)|GO:0046933(InterPro)
Cone20ag0682 188 Gene3D - 5 97 IPR026015 -
Cone20ag0682 188 ProSitePatterns ATP synthase delta (OSCP) subunit signature. 138 157 IPR020781 GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0342 Cone-Chr17:1599672 Cone20ag0682 Cone-Chr20:4212310 7.03E-12 dispersed
Cone17ag0755 Cone-Chr17:5671832 Cone20ag0682 Cone-Chr20:4212310 8.75E-108 dispersed
Cone20ag0682 Cone-Chr20:4212310 Cone20ag1069 Cone-Chr20:7462213 3.57E-11 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0682 K02113 - mdm:103443904 285.419