Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0683 ATGTCGATGCTCGACTCCTTCTTCAACAAGGGCTTTAAAGCTGTCAAATGTAAAACCTTGCTGAAACTGGCAATTCCACGGATAAAGTTGCTGAGGAACCGTAGAGAGATTCAATTAAAGCAGATGCGTCGTGATATTGCCAAGCTTCTTGAAACTGGTCAGGAAGCAACCGCTCGCATTCGGGTAGAGCATATAATCAGAGAAGAGAATATGATTGCAGCTCAAGAGATTATTGAGCTATTCTGTGAGCTTATTGTTGTTCGCCTTCCTATTATTGAAACCCAAAGAGAATGTCCTATCGACTTAAAAGAGGCAATATCAAGTGTGTGTTTTGCAGCCCCAAGGTGTGCTGATCTGCCAGAGTTGCTTCAGGTTCAACTCCTGTTTGCGTCCAAGTATGGGAAGGAATTTGTCTCAGCTGCGACTGAGCTCATGCCAAGTTGTGGGGTCAATCGCCAGTTAATAGAATTACTTTCCGTACGAGCTCCTTCACCCCAAAAGAAACTGAACCTCTTGAAAGAAATAGCTGAAGAACATGAATTAGATTGGGACCCTGCTGCCTCTGAAACTGAGTTCTTAAAACCCCATGAAGATTTACTTAATGGTCCCACACAGTTTGCTAGTGGATCTAAGTTGCCCCTTCCCAAAGAGAAACATGATGAAATATCATCAACCCATGATCAAATAAACAAGGATGTGGTTGAACCTGATTCTGATACAGATTTCGATGTACTAGATTTCCCTGAAATACCAAAAGCACCACTACGTTCAGCTTCCAATGTGATTGCATCCGCCCCGGAAACAGTGCCACATTTTGTCGAGGACCCACAACCTGAAAACGAGATTTATACATCAAAACATCCTCATGTACCAGAAAACCAGCCAGAGGGCATTTTGAATTCTGAACCTAAGGAGGAAGAGGGAGAAGAGACCAAACAAACAAATGTACCTGCTAGTGCTGTTAATGAGGATAATAAGCAGTTTGTTCCATTTATATCTCCCCCACTATTTTCTTCTACCTCAACGTTGTCCTCTACAAGACAGCATGATATGGGACCGTCTCATCTTTCTGGAAGAAAAAGTGGGGCCGATTTGGATCTGCAAGATGTATTGGCTGCTGCTCAGGCTGCTGCTGAAACAGCAGAACGAGCAGCATCTGCAGCTCGCTCGGTAGCTAGCCTCGCTCAGGTCAGAATCAGTGAGCTTACAAGGAAAAATAGTGAACGAGAGAAAAGCTCTGAGAATCCTTTCCATATGGATAAACCGACCCAGTTGGATCAAAAGAATTCATTTGGTGATTCTTCTCATGGAGTTTTTAATTCTTCAGAATATCTCCATGGTGGACTAGACGAGGATTCAAATCTATCCTCTGTTGAACAAGTCAAACTGACCTTTGATTCGCCTCCTAGAAATGATCATGTTTTCCATGGTGAAGCTATGGGTCACCAGCCTCAGAGACTGCCTTCGATGGAAGATGATCCATACTTCTCGTACCCGAACTTGTTTACACCACAGAACCTAAATCTCGGATCCAGTTCTCAATCTCTTACAGACAACAGGTGA 1563 43.44 MSMLDSFFNKGFKAVKCKTLLKLAIPRIKLLRNRREIQLKQMRRDIAKLLETGQEATARIRVEHIIREENMIAAQEIIELFCELIVVRLPIIETQRECPIDLKEAISSVCFAAPRCADLPELLQVQLLFASKYGKEFVSAATELMPSCGVNRQLIELLSVRAPSPQKKLNLLKEIAEEHELDWDPAASETEFLKPHEDLLNGPTQFASGSKLPLPKEKHDEISSTHDQINKDVVEPDSDTDFDVLDFPEIPKAPLRSASNVIASAPETVPHFVEDPQPENEIYTSKHPHVPENQPEGILNSEPKEEEGEETKQTNVPASAVNEDNKQFVPFISPPLFSSTSTLSSTRQHDMGPSHLSGRKSGADLDLQDVLAAAQAAAETAERAASAARSVASLAQVRISELTRKNSEREKSSENPFHMDKPTQLDQKNSFGDSSHGVFNSSEYLHGGLDEDSNLSSVEQVKLTFDSPPRNDHVFHGEAMGHQPQRLPSMEDDPYFSYPNLFTPQNLNLGSSSQSLTDNR 520
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4214125 4224656 + Conep20aG0070400.1 Cone20ag0683 460587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0683 520 MobiDBLite consensus disorder prediction 418 441 - -
Cone20ag0683 520 Gene3D - 5 192 IPR042277 -
Cone20ag0683 520 MobiDBLite consensus disorder prediction 402 445 - -
Cone20ag0683 520 MobiDBLite consensus disorder prediction 278 319 - -
Cone20ag0683 520 MobiDBLite consensus disorder prediction 475 520 - -
Cone20ag0683 520 MobiDBLite consensus disorder prediction 402 417 - -
Cone20ag0683 520 Pfam Regulator of Vps4 activity in the MVB pathway 18 181 IPR005061 GO:0015031(InterPro)
Cone20ag0683 520 MobiDBLite consensus disorder prediction 340 361 - -
Cone20ag0683 520 PANTHER IST1 FAMILY MEMBER 10 503 IPR005061 GO:0008104(PANTHER)|GO:0015031(InterPro)
Cone20ag0683 520 FunFam IST1-like protein isoform A 6 192 - -
Cone20ag0683 520 Coils Coil 32 59 - -
Cone20ag0683 520 MobiDBLite consensus disorder prediction 499 520 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0683 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag1335 Cone-Chr10:10427561 Cone20ag0683 Cone-Chr20:4214125 4.48E-30 dispersed
Cone13ag0839 Cone-Chr13:7577971 Cone20ag0683 Cone-Chr20:4214125 2.04E-41 dispersed
Cone16ag0584 Cone-Chr16:7642828 Cone20ag0683 Cone-Chr20:4214125 4.48E-38 dispersed
Cone17ag0756 Cone-Chr17:5680925 Cone20ag0683 Cone-Chr20:4214125 6.32E-274 dispersed
Cone20ag0683 Cone-Chr20:4214125 Cone6ag1704 Cone-Chr6:12866120 1.04E-79 dispersed
Cone9ag0460 Cone-Chr9:2179862 Cone20ag0683 Cone-Chr20:4214125 4.38E-07 dispersed
Cone20ag0683 Cone-Chr20:4214125 Cone6ag0447 Cone-Chr6:2190504 2.68E-79 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1309 Blo01g01750 Blo12g00768 . Bda03g00412 Bpe02g00192 Bpe04g00378 Bma04g00389 Bma01g02532 . . . . Car01g00848 . . Cpe06g00956 . . . . . . . . Cla08g00312 Cam08g0750 Cec08g0303 . Clacu08g0461 . . . . . Cone20ag0683 . . . . . . Bda11g00852 . . . . . . . Cmo09g01216 . . . Car09g01087 . . . . . . . . . . . . . . . . Lsi08g00258 . Chy03g00282 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006306 2 1 1 2 2 1 3 1 1 1 1 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 0 3 1 1 38