Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0684 ATGGAGGAAGGCATAGTTTCGGCTTTGTTTCTATTCTGGCTGATCTTAGGGGTTCGCTTACTATGGCTGGTTTCTGCTAATATGGAAGGTGATGCTTTACATAGCCTAAGGACTAATTTGCAAGATCCCAACAATGTTCTGCAGAGTTGGGATCCTACACTCGTGAATCCATGCACTTGGTTTCATGTCACATGCAATAATGACAATAGCGTCATAAGAGTGGATCTTGGAAATGCAGCTTTGTCTGGACAACTCGTTCCTCAGCTCGGTCTGCTAAAGAATTTGCAGTATCTAGAACTCTACAGTAATAACATAGGTGGAATTATTCCAAGTGACCTGGGGAATCTTACTAATTTAGTGAGCTTAGATCTTTACTTGAACAGTTTCACTGGTTCCATTCCCGACACATTGGGAAAGCTGTCGAAATTGCGGTTCCTCCGGCTTAACAACAACAGCTTGTCGGGTCGTATTCCTATGTCCTTGACTAACATTACATCACTTCAAGTGTTGGATCTATCCAGTAACCGTCTCTCAGGAGTTGTTCCAGACAATGGATCATTCTCCTTATTCACTCCCATTAGTTTTGCTAGAAACTTGGATCTGTGTGGCCCTGTTACTGGGCATCCCTGCCCTGGATCTCCTCCGTTCTCTCCTCCTCCTCCCTTTGTTCCACCTCCTCCAATTTCTTCACCCGGAGGGAATAGTGCGACTGGGGCAATTGCTGGAGGAGTTGCTGCTGGTGCAGCTTTACTATTTGCTGCTCCTGCAATTGCATTTGCATGGTGGCGTCGAAGAAAACCACAGGAGTATTTCTTTGATGTACCTGCTGAAGAGGACCCAGAAGTCCATCTGGGCCAGCTCAAAAGATTCTCATTGCGAGAATTACAAGTTGCAACTGATACTTTTAGTAATAAAAACATTCTTGGCAGAGGTGGATTTGGTAAAGTTTACAAAGGACGACTTGCAGATGGCTCTCTAGTGGCTGTAAAAAGGCTGAAAGAAGAGCGTACACCTGGTGGAGAGCTGCAATTTCAAACGGAAGTAGAGATGATCAGCATGGCGGTTCATCGGAATCTCCTCAGATTACAAGGTTTTTGTATGACACCAACTGAAAGACTTCTTGTTTACCCCTACATGGCTAATGGAAGTGTTGCTTCATGTTTAAGAGAACGTCCACCATCTCAACCACCTCTTGAGTGGCAAACGAGGAAACGAATCGCACTAGGATCTGCAAGAGGGCTTTCTTATTTACATGATCATTGTGACCCGAAGATTATTCATAGGGATGTGAAAGCCGCAAACATTTTGCTAGACGAGGAGTTTGAGGCCGTTGTTGGGGACTTTGGGTTGGCTAAACTCATGGACTACAAGGATACTCATGTTACTACTGCTGTCCGTGGGACCATTGGGCACATAGCTCCAGAATACCTTTCTACTGGGAAATCTTCTGAGAAAACTGACGTTTTTGGTTACGGGATAATGCTTCTCGAACTAATTACCGGACAGAGAGCATTTGATCTTGCTCGGCTAGCAAATGATGACGATGTCATGTTACTTGATTGGGTTAAAGGACTCCTAAAAGAGAAGAAGTTAGAAATGCTGGTCGACCCTGATCTTCAGAACAATTACATAGAGTCAGAAGTAGAGCAGCTAATCCAGGTGGCTCTGCTCTGCACACAAGGCTCTCCCATGGAGCGCCCAAAGATGTCGGAAGTGGTGAGAATGCTCGAAGGTGATGGGTTGGCAGAGAGATGGGACGAATGGCAGAAGGTAGAAGTTCTTCGTCAGGAGGTTGAACTCGCTCCACATCCTAGTTCCGATTGGATTCTTGATTCCACTGAGAATTTACACGCAGTGGAGTTATCTGGTCCAAGATAA 1878 45.15 MEEGIVSALFLFWLILGVRLLWLVSANMEGDALHSLRTNLQDPNNVLQSWDPTLVNPCTWFHVTCNNDNSVIRVDLGNAALSGQLVPQLGLLKNLQYLELYSNNIGGIIPSDLGNLTNLVSLDLYLNSFTGSIPDTLGKLSKLRFLRLNNNSLSGRIPMSLTNITSLQVLDLSSNRLSGVVPDNGSFSLFTPISFARNLDLCGPVTGHPCPGSPPFSPPPPFVPPPPISSPGGNSATGAIAGGVAAGAALLFAAPAIAFAWWRRRKPQEYFFDVPAEEDPEVHLGQLKRFSLRELQVATDTFSNKNILGRGGFGKVYKGRLADGSLVAVKRLKEERTPGGELQFQTEVEMISMAVHRNLLRLQGFCMTPTERLLVYPYMANGSVASCLRERPPSQPPLEWQTRKRIALGSARGLSYLHDHCDPKIIHRDVKAANILLDEEFEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGIMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKEKKLEMLVDPDLQNNYIESEVEQLIQVALLCTQGSPMERPKMSEVVRMLEGDGLAERWDEWQKVEVLRQEVELAPHPSSDWILDSTENLHAVELSGPR 625
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4226198 4231593 - Conep20aG0070500.1 Cone20ag0684 460588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0684 625 SMART serkin_6 302 576 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0684 625 Gene3D Phosphorylase Kinase; domain 1 271 378 - -
Cone20ag0684 625 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 13 625 - -
Cone20ag0684 625 SUPERFAMILY L domain-like 30 192 - -
Cone20ag0684 625 ProSitePatterns Serine/Threonine protein kinases active-site signature. 425 437 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0684 625 Pfam Protein tyrosine and serine/threonine kinase 305 576 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0684 625 SUPERFAMILY Protein kinase-like (PK-like) 281 577 IPR011009 -
Cone20ag0684 625 FunFam Somatic embryogenesis receptor kinase 1 271 378 - -
Cone20ag0684 625 ProSiteProfiles Protein kinase domain profile. 302 589 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0684 625 Pfam Leucine Rich Repeat 166 184 IPR001611 GO:0005515(InterPro)
Cone20ag0684 625 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cone20ag0684 625 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515(InterPro)
Cone20ag0684 625 Gene3D Ribonuclease Inhibitor 25 212 IPR032675 -
Cone20ag0684 625 FunFam Somatic embryogenesis receptor kinase 1 25 212 - -
Cone20ag0684 625 FunFam Somatic embryogenesis receptor-like kinase 1 379 596 - -
Cone20ag0684 625 Gene3D Transferase(Phosphotransferase) domain 1 379 596 - -
Cone20ag0684 625 ProSitePatterns Protein kinases ATP-binding region signature. 308 330 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone10ag0914 Cone-Chr10:4743650 Cone20ag0684 Cone-Chr20:4226198 4.11E-270 dispersed
Cone12ag0747 Cone-Chr12:6856057 Cone20ag0684 Cone-Chr20:4226198 2.91E-146 dispersed
Cone14ag0595 Cone-Chr14:2948410 Cone20ag0684 Cone-Chr20:4226198 3.76E-34 dispersed
Cone18ag0040 Cone-Chr18:240980 Cone20ag0684 Cone-Chr20:4226198 1.77E-33 dispersed
Cone20ag0684 Cone-Chr20:4226198 Cone4ag1526 Cone-Chr4:11830753 0 dispersed
Cone3ag1020 Cone-Chr3:29009037 Cone20ag0684 Cone-Chr20:4226198 1.49E-31 dispersed
Cone17ag0757 Cone-Chr17:5685624 Cone20ag0684 Cone-Chr20:4226198 6.86E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82551 PF01190 Pollen_Ole_e_1 2.70E-19 CL0287 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0684 K13418 - csv:101208695 1075.46