Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0703 ATGCAACCAACAACTGCAGGCGCTAGTAGTAGCAGTAGCGGTGGTGGTGGTTCCGGTGAACTGAGTCGTGGCAGTGGACTCGCCCGGTTCCGCTCAGCTCCGGCGACCTGGTTGGAAGCACTCTTGGAAGAAGAAGAGGAAGACCCTTTGAAGCTCAACCAGTGTCCGACTCAGCTTCTTGCCGACACTCCCACACCCAGTTCGCGAAACGCCGTTTCCACCTTTGCTTCCTCTGCCGAACCAGGTCTGTTCGAGTTGGGTTCGTCGCACGAGTTTTTGAGGCAAAATAGTTCACCGGCTGAGTTTCTTGGAAATTCCGGAATCGGGTCTGATGGATTCCTCTCCAACTTTGGAATTTCAGCCAATTATGAATTTCCACCCTCCAATTTGGAGGTTTCTCCGGCGAGTAAGCGGGCACAATTTTCAGCTCAGCTGAAAGGGGAACAAAGGAGTCAAGTTTCTGATGGGGTTTCAACGTTGATAGATTTGGAGATGGAGAAATTCTTGGAGGATTCAGTTCCATGCCGAGTTCGAGCAAAGCGTGGTTGTGCTACCCACCCGAGAAGCATTGCAGAGAGGGTTCGAAGGACTCGCATCAGTGACAGGATAAGGAAGCTTCAAGAGTTGGTGCCCAATATGGACAAGCAAACAAACACTGCTGATATGTTAGAAGAGGCAGTAGAATATGTCAAGTTTCTTCAAAGGCAGATTGAGGAACTGTCGGAACATCAAAGGAAGTGCAAATGCATGGTTAAAGATTAG 762 49.61 MQPTTAGASSSSSGGGGSGELSRGSGLARFRSAPATWLEALLEEEEEDPLKLNQCPTQLLADTPTPSSRNAVSTFASSAEPGLFELGSSHEFLRQNSSPAEFLGNSGIGSDGFLSNFGISANYEFPPSNLEVSPASKRAQFSAQLKGEQRSQVSDGVSTLIDLEMEKFLEDSVPCRVRAKRGCATHPRSIAERVRRTRISDRIRKLQELVPNMDKQTNTADMLEEAVEYVKFLQRQIEELSEHQRKCKCMVKD 253
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 4487995 4493180 + Conep20aG0072400.1 Cone20ag0703 460607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0703 253 Pfam Helix-loop-helix DNA-binding domain 189 234 IPR011598 GO:0046983(InterPro)
Cone20ag0703 253 Coils Coil 223 243 - -
Cone20ag0703 253 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 54 244 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
Cone20ag0703 253 SMART finulus 189 239 IPR011598 GO:0046983(InterPro)
Cone20ag0703 253 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 233 IPR011598 GO:0046983(InterPro)
Cone20ag0703 253 FunFam Transcription factor bHLH130 family 184 252 - -
Cone20ag0703 253 Gene3D - 184 253 IPR036638 GO:0046983(InterPro)
Cone20ag0703 253 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 186 248 IPR036638 GO:0046983(InterPro)
Cone20ag0703 253 MobiDBLite consensus disorder prediction 1 25 - -
Cone20ag0703 253 CDD bHLH_AtbHLH_like 188 241 IPR045239 -
Cone20ag0703 253 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0703 Cone-Chr20:4487995 Cone3ag0079 Cone-Chr3:454478 4.93E-34 dispersed
Cone20ag0703 Cone-Chr20:4487995 Cone10ag0064 Cone-Chr10:378889 6.03E-35 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45618 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0703 - - - 0.0