Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0732 | ATGGAAGAAATCCAACCCAATTCTGAGCTCAATTCTTCCTCCGATTACTTTCTCAATCCAAACTCTGACAAGATCAGCAACCACTACGATTCAATCTTTTCTAATAAAATCTCCAATGGGGGCTTCCTGATCAGGGAGTTGATAGGAAATTTGGGAAATTCTTCTCCTCCTCCTCCACCGAAAATAAATTTTCCGGTTAGAGAAAGCATGCCGAGCATAGAAACCTCAATGCCGGCCCCACTGAATTCTACTAGCGTTGAAGAATTCTCAGCTGATCCTGGATTTGAAGAGAGGGCGGCAAGATTCTCTCGATTTGGCAGCAGGAATTTAAATTGTCGGACCACAACCGGATTCGGGTCGAATTGCAGTGAATTATCGCTGCCTTACGGATCTTACCCATTAATGGCTTCTAATGGCAAGCTTGCTCGTGTTTCAAGCACTCCTTCGCTTCAAGCCCTTGGATCAAATAATAATAATTTTCCAGAGGAATCCACACTCTCCGAGCAAATTCCGGCTGGAGGTGAAACGACGTCGCTGAAATCTTCCAACGACTTGAATTCGAGAAAGAGGAAAGGAGTCCCAAAAGGAAAAGTGAAAGAGCTAGTTCCCTCGTCCCCATCTGTTAATATAACCAAGGTGGGTGAAATTGATCATAATTCAAGTGCAAAAAAGCGTTACAGGGTAAGTGAAGGTAACGGAAGAGATCAAAATCAGAAGGGAATAAGCTGTATGAAAGCAGAGGAGAATACTGGTCCTGCTGCAGAGGATGAAAAGGACAAAGAAACAAAATCAAGCCCCAAGCCTCTAGAAGCTCCGAAGGACTACATTCATGTTAGAGCAAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTCAGAAGAGAGAAGATTAGCGAACGAATGAAAGTTCTCCAAGATACAGTACCTGGCTGCAATAAGGTGACTGGAAAAGCACTTTTGCTTGACGAGATTATAAATTACGTCCAGTCATTGCAACGTCAGGTGGAGTTCCTTTCTATGAAGCTGGCTTCTGTAAATACTAATCTTGATTGTAATGGGGATGATGCTTTATTAATCTCAAAAGAACTGTATCAATCAAGCAGCCCCTCCTTGCCTTGTCTAGATTCAACGCCGGGTAACAGTTTTTACAGCCACCAGTCACGGCCAAATCCTCTCCTCCAAAACGGAATTTTAAACGGTCAAATGGAAAATTGCTGA | 1227 | 43.28 | MEEIQPNSELNSSSDYFLNPNSDKISNHYDSIFSNKISNGGFLIRELIGNLGNSSPPPPPKINFPVRESMPSIETSMPAPLNSTSVEEFSADPGFEERAARFSRFGSRNLNCRTTTGFGSNCSELSLPYGSYPLMASNGKLARVSSTPSLQALGSNNNNFPEESTLSEQIPAGGETTSLKSSNDLNSRKRKGVPKGKVKELVPSSPSVNITKVGEIDHNSSAKKRYRVSEGNGRDQNQKGISCMKAEENTGPAAEDEKDKETKSSPKPLEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKVLQDTVPGCNKVTGKALLLDEIINYVQSLQRQVEFLSMKLASVNTNLDCNGDDALLISKELYQSSSPSLPCLDSTPGNSFYSHQSRPNPLLQNGILNGQMENC | 408 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 5014150 | 5016538 | - | Conep20aG0075300.1 | Cone20ag0732 | 460636 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0732 | 408 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 284 | 334 | IPR011598 | GO:0046983(InterPro) | |
Cone20ag0732 | 408 | MobiDBLite | consensus disorder prediction | 149 | 274 | - | - | |
Cone20ag0732 | 408 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 282 | 349 | IPR036638 | GO:0046983(InterPro) | |
Cone20ag0732 | 408 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 86 | 375 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
Cone20ag0732 | 408 | MobiDBLite | consensus disorder prediction | 149 | 183 | - | - | |
Cone20ag0732 | 408 | MobiDBLite | consensus disorder prediction | 250 | 274 | - | - | |
Cone20ag0732 | 408 | SMART | finulus | 290 | 340 | IPR011598 | GO:0046983(InterPro) | |
Cone20ag0732 | 408 | Gene3D | - | 281 | 355 | IPR036638 | GO:0046983(InterPro) | |
Cone20ag0732 | 408 | Pfam | Helix-loop-helix DNA-binding domain | 288 | 335 | IPR011598 | GO:0046983(InterPro) | |
Cone20ag0732 | 408 | MobiDBLite | consensus disorder prediction | 217 | 232 | - | - | |
Cone20ag0732 | 408 | CDD | bHLH_AtBPE_like | 274 | 358 | - | - | |
Cone20ag0732 | 408 | FunFam | Basic helix-loop-helix transcription factor | 281 | 353 | - | - | |
Cone20ag0732 | 408 | Coils | Coil | 331 | 351 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone18ag0913 | Cone-Chr18:6505353 | Cone20ag0732 | Cone-Chr20:5014150 | 5.20E-62 | dispersed | |
Cone19ag0102 | Cone-Chr19:583082 | Cone20ag0732 | Cone-Chr20:5014150 | 1.03E-37 | dispersed | |
Cone20ag0732 | Cone-Chr20:5014150 | Cone8ag1204 | Cone-Chr8:10239336 | 3.18E-41 | dispersed | |
Cone17ag0663 | Cone-Chr17:4075955 | Cone20ag0732 | Cone-Chr20:5014150 | 2.71E-218 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45622 | None | None | None | None | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0732 | - | - | - | 0.0 |