Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0732 ATGGAAGAAATCCAACCCAATTCTGAGCTCAATTCTTCCTCCGATTACTTTCTCAATCCAAACTCTGACAAGATCAGCAACCACTACGATTCAATCTTTTCTAATAAAATCTCCAATGGGGGCTTCCTGATCAGGGAGTTGATAGGAAATTTGGGAAATTCTTCTCCTCCTCCTCCACCGAAAATAAATTTTCCGGTTAGAGAAAGCATGCCGAGCATAGAAACCTCAATGCCGGCCCCACTGAATTCTACTAGCGTTGAAGAATTCTCAGCTGATCCTGGATTTGAAGAGAGGGCGGCAAGATTCTCTCGATTTGGCAGCAGGAATTTAAATTGTCGGACCACAACCGGATTCGGGTCGAATTGCAGTGAATTATCGCTGCCTTACGGATCTTACCCATTAATGGCTTCTAATGGCAAGCTTGCTCGTGTTTCAAGCACTCCTTCGCTTCAAGCCCTTGGATCAAATAATAATAATTTTCCAGAGGAATCCACACTCTCCGAGCAAATTCCGGCTGGAGGTGAAACGACGTCGCTGAAATCTTCCAACGACTTGAATTCGAGAAAGAGGAAAGGAGTCCCAAAAGGAAAAGTGAAAGAGCTAGTTCCCTCGTCCCCATCTGTTAATATAACCAAGGTGGGTGAAATTGATCATAATTCAAGTGCAAAAAAGCGTTACAGGGTAAGTGAAGGTAACGGAAGAGATCAAAATCAGAAGGGAATAAGCTGTATGAAAGCAGAGGAGAATACTGGTCCTGCTGCAGAGGATGAAAAGGACAAAGAAACAAAATCAAGCCCCAAGCCTCTAGAAGCTCCGAAGGACTACATTCATGTTAGAGCAAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTCAGAAGAGAGAAGATTAGCGAACGAATGAAAGTTCTCCAAGATACAGTACCTGGCTGCAATAAGGTGACTGGAAAAGCACTTTTGCTTGACGAGATTATAAATTACGTCCAGTCATTGCAACGTCAGGTGGAGTTCCTTTCTATGAAGCTGGCTTCTGTAAATACTAATCTTGATTGTAATGGGGATGATGCTTTATTAATCTCAAAAGAACTGTATCAATCAAGCAGCCCCTCCTTGCCTTGTCTAGATTCAACGCCGGGTAACAGTTTTTACAGCCACCAGTCACGGCCAAATCCTCTCCTCCAAAACGGAATTTTAAACGGTCAAATGGAAAATTGCTGA 1227 43.28 MEEIQPNSELNSSSDYFLNPNSDKISNHYDSIFSNKISNGGFLIRELIGNLGNSSPPPPPKINFPVRESMPSIETSMPAPLNSTSVEEFSADPGFEERAARFSRFGSRNLNCRTTTGFGSNCSELSLPYGSYPLMASNGKLARVSSTPSLQALGSNNNNFPEESTLSEQIPAGGETTSLKSSNDLNSRKRKGVPKGKVKELVPSSPSVNITKVGEIDHNSSAKKRYRVSEGNGRDQNQKGISCMKAEENTGPAAEDEKDKETKSSPKPLEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKVLQDTVPGCNKVTGKALLLDEIINYVQSLQRQVEFLSMKLASVNTNLDCNGDDALLISKELYQSSSPSLPCLDSTPGNSFYSHQSRPNPLLQNGILNGQMENC 408
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5014150 5016538 - Conep20aG0075300.1 Cone20ag0732 460636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0732 408 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 284 334 IPR011598 GO:0046983(InterPro)
Cone20ag0732 408 MobiDBLite consensus disorder prediction 149 274 - -
Cone20ag0732 408 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 282 349 IPR036638 GO:0046983(InterPro)
Cone20ag0732 408 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 86 375 IPR024097 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cone20ag0732 408 MobiDBLite consensus disorder prediction 149 183 - -
Cone20ag0732 408 MobiDBLite consensus disorder prediction 250 274 - -
Cone20ag0732 408 SMART finulus 290 340 IPR011598 GO:0046983(InterPro)
Cone20ag0732 408 Gene3D - 281 355 IPR036638 GO:0046983(InterPro)
Cone20ag0732 408 Pfam Helix-loop-helix DNA-binding domain 288 335 IPR011598 GO:0046983(InterPro)
Cone20ag0732 408 MobiDBLite consensus disorder prediction 217 232 - -
Cone20ag0732 408 CDD bHLH_AtBPE_like 274 358 - -
Cone20ag0732 408 FunFam Basic helix-loop-helix transcription factor 281 353 - -
Cone20ag0732 408 Coils Coil 331 351 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0913 Cone-Chr18:6505353 Cone20ag0732 Cone-Chr20:5014150 5.20E-62 dispersed
Cone19ag0102 Cone-Chr19:583082 Cone20ag0732 Cone-Chr20:5014150 1.03E-37 dispersed
Cone20ag0732 Cone-Chr20:5014150 Cone8ag1204 Cone-Chr8:10239336 3.18E-41 dispersed
Cone17ag0663 Cone-Chr17:4075955 Cone20ag0732 Cone-Chr20:5014150 2.71E-218 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45622 None None None None Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0732 - - - 0.0