Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0752 ATGGACCTTCCGCATTTTTGGATTGTCTTCTTCCTATCCTCTTGCTTTTTCCTCCTTGTTTTCTCCGATCCAAATGGTTTCTTAAGCATCTCTTGTGGTGGAACCAAGAGTTATACCGATTCGTCCAATATCTCATGGGTCCCTGACACTGAGTACATAACCACAGGAAACATATCAACAACTGACCAAAATAATCCTGTTCGGTTTTTTCCCGCCAATTCCCAAGTTCGAAAATGTTACAAGTTACCATTGAAAAATTATTCCTCACTAGTTCTCATTAGAGCCCGGTTTATGTACAATAACTATGATAGGTTTGGAAAGCCCCCCACCTTCTCCATTTCTCTTGGAACAGCCATTACTAGCACTGTAAACCTCAGTACTAATGATCCTTGGACCGAAGAATTTATATGGTCAGTTAACAAGGACATACTCTCTGTGTGTTTGCATTCTATTCCTAATAGTGGCAATCCTGTAATTTCCTCCCTCGAAATCCGGCCCCTCCCTCAAGGAGCTTATAGAGACGGGATCCAAGAACATTCGAATCACTTACTTCGAAAGTCTTACCGGCTCAATTGTGGTTATAATAATGGATCACTTAGATACCCTTTAGATTCGCTCGATCGAATATGGGATGGGGATGGAAAATTCATTCCTTTTCATTCTTCAACCGGATTTAAGATTATGCAGAGCTTCAATTTAAAATCCGGACTAAGGGAAAGTCCACCTTTAGCCGTTCTTCAGACGGCAAGAGTTTTGGCCAGAAGGGATTTATTGACTTACAACTTTGATCTTAAAGCACAGGGGGACTATTTCATCATCCTTTACTTTGCCGGGATTCTTCCGGTTTACCCTTCATTTGATGTATTGATCAATGAAGAGGTTGTAGAATCAAACTACACAATAAGAAGATCAGATGTGAGTTCTATACATGTTACTAAGAAAGAAGTGAATAGGAGCTTGAACATCACTTTTAAGAGTGTCAAGTTCTATCCTCAAGTCAATGCAATCGAGGTGTATGAGATTGTTGGGATTCCATTAGAAGCTTCCTCTACAACAGTGTCTGCCCTTGAGGTTATTCAGCAATCTACCGGTTTCGATCTGGGATGGGAAGATGATCCGTGCTCTCCAAAAACATGGGAACACCTTGGCTGTGAAGGAAACCTTGTAACATATCTGGATTTGCACAACACATCACTTGAAGGTGCAATAGAGAATTTGGAGAGCTTACTACATATTCAGAAACTGAACTTGAGTTTCAACCAGCTAACATCATTTGGTTCAGAAATGGACAACTTAATTAGCCTTCAAGTCCTGGACTTGAAAAACAACACTCTACAAGGAACAGTTCCAGTTAGCTTGGGAGAGCTAGAGGACCTTCACCTATTGAATCTGGAAAACAATGAGCTAGAAGGTCCCTTGCCACAATCTTTGAACAAAGAAAGTTTAGAAATTAGAACATTAGGAAATAAATGTCTTTCGTTCTCGACAATGGCGTGCGACGAAGAAGATTTGTCATCATCAAACACATCAATTGAGACCCCGCATTTTACCATAATTCCAAAGAAGAAGCATGCCAGACCACATAATCACATTCTGATTGTTCTAGGTGCAGTTTCAGGAGCTTTACTTGCAGCTATCTTTGTTATCTTGCTTTTGGTATTCTTGTACAAGAAGAAACACAGAACTGATGAGCTCACATATTCAGCAAAAATTGAGCTAAGAAATTGGAATATGGCAAAGGTATTTTCATACAAAGAGATAAAAGCAGCTACAAATAACTTCAAGCAGATTATAGGAAGTGGAAGTTTTGGAAATGTTTACCTCGGAAAGCTTCCGGGTGGAAAAATGGTGGCTGTGAAAGTCCGGTTTGATAAAAGCCAACTTGCGACTGATTCATTTATCAATGAGGTACATCTGTTGTCTCGAATTCATCACCAAAATCTGGTTTGCTTGGAAGGGTTTTGTCATGAATCAAAGAAACAAATACTTGTATATGAGTATCTAGCGGCCGGATCCTTGGCCGATCACCTTTACGGCACAAACAGTAAAAAAGTTTCACTCAGCTGGGTTCGTAGACTCAAAATCGCCATTGATGCTGCAAAAGGATTGGACTACTTACACAACGGAAACGAACCGAGAATAATACATAGAGATGTGAAGTGCAGTAACATCCTTTTGGATATGGAAATGAATGGCAAGGTCTGTGATTTTGGCCTCTCTAAGCAACTGACCAGACCTGATGCTACTCATGTCACCACTGCTGTCAAGGGAACTGCTGGCTATCTTGATCCTGAATATTACTCCACACAACAACTGACCGAGAAGAGCGATGTGTATAGCTTCGGAGTTGTTCTTTTGGAACTTATCTGTGGACGAGAACCTCTGAGTCATTCCGGAACTCCAGATTCTTTCAATTTAGTCCTATGGGCCAAGCCATACTTGCAAGCAGGGGCATATGAGATAGTGGATGAGAGCTTAAGGGGCAGTTTTGATGAGGAAAGCATGAAAACGGCAGCTCTAGTTGCTGTCAAATGTGTAGAAAGAGATGCTTCACATAGACCCAAAATAGCTGAGGTTTTGGCTGAGCTCAAACATGCTTATAGCATTCAAATTGCTTATCTTGCTACTTCCAATCTGTGA 2640 40.76 MDLPHFWIVFFLSSCFFLLVFSDPNGFLSISCGGTKSYTDSSNISWVPDTEYITTGNISTTDQNNPVRFFPANSQVRKCYKLPLKNYSSLVLIRARFMYNNYDRFGKPPTFSISLGTAITSTVNLSTNDPWTEEFIWSVNKDILSVCLHSIPNSGNPVISSLEIRPLPQGAYRDGIQEHSNHLLRKSYRLNCGYNNGSLRYPLDSLDRIWDGDGKFIPFHSSTGFKIMQSFNLKSGLRESPPLAVLQTARVLARRDLLTYNFDLKAQGDYFIILYFAGILPVYPSFDVLINEEVVESNYTIRRSDVSSIHVTKKEVNRSLNITFKSVKFYPQVNAIEVYEIVGIPLEASSTTVSALEVIQQSTGFDLGWEDDPCSPKTWEHLGCEGNLVTYLDLHNTSLEGAIENLESLLHIQKLNLSFNQLTSFGSEMDNLISLQVLDLKNNTLQGTVPVSLGELEDLHLLNLENNELEGPLPQSLNKESLEIRTLGNKCLSFSTMACDEEDLSSSNTSIETPHFTIIPKKKHARPHNHILIVLGAVSGALLAAIFVILLLVFLYKKKHRTDELTYSAKIELRNWNMAKVFSYKEIKAATNNFKQIIGSGSFGNVYLGKLPGGKMVAVKVRFDKSQLATDSFINEVHLLSRIHHQNLVCLEGFCHESKKQILVYEYLAAGSLADHLYGTNSKKVSLSWVRRLKIAIDAAKGLDYLHNGNEPRIIHRDVKCSNILLDMEMNGKVCDFGLSKQLTRPDATHVTTAVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLSHSGTPDSFNLVLWAKPYLQAGAYEIVDESLRGSFDEESMKTAALVAVKCVERDASHRPKIAEVLAELKHAYSIQIAYLATSNL 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5246327 5251083 - Conep20aG0077300.1 Cone20ag0752 460656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0752 879 Pfam Protein kinase domain 594 861 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0752 879 CDD STKc_IRAK 598 864 - -
Cone20ag0752 879 Pfam Leucine Rich Repeat 434 456 IPR001611 GO:0005515(InterPro)
Cone20ag0752 879 SUPERFAMILY Protein kinase-like (PK-like) 567 861 IPR011009 -
Cone20ag0752 879 FunFam serine/threonine-protein kinase PBS1-like 559 667 - -
Cone20ag0752 879 Gene3D Ribonuclease Inhibitor 353 514 IPR032675 -
Cone20ag0752 879 Pfam Malectin-like domain 30 341 IPR024788 -
Cone20ag0752 879 ProSiteProfiles Protein kinase domain profile. 592 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0752 879 ProSitePatterns Serine/Threonine protein kinases active-site signature. 714 726 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0752 879 SMART serkin_6 592 868 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0752 879 SUPERFAMILY L domain-like 358 483 - -
Cone20ag0752 879 Gene3D Transferase(Phosphotransferase) domain 1 668 874 - -
Cone20ag0752 879 Gene3D - 186 342 - -
Cone20ag0752 879 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 668 874 - -
Cone20ag0752 879 ProSitePatterns Protein kinases ATP-binding region signature. 598 620 IPR017441 GO:0005524(InterPro)
Cone20ag0752 879 PANTHER OS07G0107800 PROTEIN-RELATED 25 866 - -
Cone20ag0752 879 Gene3D Phosphorylase Kinase; domain 1 566 667 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0752 Cone-Chr20:5246327 Cone4ag0940 Cone-Chr4:7847132 9.46E-95 dispersed
Cone9ag0482 Cone-Chr9:2300771 Cone20ag0752 Cone-Chr20:5246327 1.73E-27 dispersed
Cone20ag0752 Cone-Chr20:5246327 Cone13ag1294 Cone-Chr13:9676434 2.47E-115 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82552 PF02222 ATP-grasp 4.70E-50 CL0179 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0752 - - - 0.0