Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0784 ATGGAAAACCAATGCATAAACACGGAGTCGAACGAGCTCTCACAATGGGTGGATCATATTACAAAACAACTCATTGATGACGTCCCATATTCAGGCTCATTCATGGGGCCCACAGGGATGATCAACTTCGTCTCCTCTTCAGATGACTTGAGACCGAAGAAAATAGCCCGGAAAGCCCATGTCGATGCTGATGTCAGTGGAAATGAGCTAATCCTACCAACAAACAATGAGCTACAAGTGCATATTGAAAATGGTGGAACTAAGGAGTTGATTAAGAGGGTAGATCATGATCATGGATTAACCCTGATTACCCTCCTCTTTGAGTGTGCAGCTGCAATCTCAGACGATAATCTTGGCGAGGCGCATCAAATGTTGTTAGAGTTATCCCAAATGGTGTCGCCGTATGGGCCTTCATGCGCCGAGCGGGTCGTTGCCTATTTCGCCAAGGCAATGTCTAGCAGGGTTATCAACTCATGGCTTGGTATTTGTTACCCTTTGATCAATTACAGGAGTGTTCATGCCACTTTCCAAGTCTTCAACAACATTTCCCCCTTCATCAAATTTTCACACTTCACTTCGAACCAAGCCATACTCGAGGCTTTCCATCGTCGTGATCGAGTCCACATCATCGACCTCGACATCATGCAAGGCCTGCAATGGCCAGCCCTATTCCACATCCTAGCCACTCGCATTGAGGGCCCACCACATGTCAGACTGACAGGCATGGGCTCATCTATGGAGATTTTGGTGGACACGGGGAAACAGCTATCGAATTTCGCTAAACGGCTCGGAATGTCATTTGAGTTCCACCCAATTGCAAGAAAATTCGGAGAAGTTGATGCGTCCATGGTGCAAGTAAGGCATGAAGAGACATTAGCAGTGCATTGGGTACAACATTCTCTATACGATGCAATTGGACCCGATTGGAAGACATTGAGACTTATTCAACAATTGAGGCCACAAATCTTTACATTGGTAGAGCAAGATATCTTACATGGGGCATCGTTTCTCGACCGTTTTATCAGTTCTCTTCATTACTATTCATCCATTTTCGACTCGCTCGGAGCAAATTTCGGCATCGATGATTCAAGCAGGTATGAGGTGGAGAATTGCATTTTGTATAGGGAAATCAACAATATATTAGCAATAGGAGGGCCATCAAGAAGTGGAGAGGAGAGGTTTAGGCATTGGAGGAGTGAGTTGAAGAATTATTTGATACAAATTCCAATGAGTGGAAATTCAATGGCTCAAGCACAGCTGATGTTGAACATGTTCCCTCCTGGTCATGGATACAGCCTTGTGCAAGGAGAGTATGGGACACTTAAGCTTGGATGGAAGGATACTTGTTTATACACTGCTTCTTCATGGACTTGTTCTACTGCTGCCAGATAG 1392 44.97 MENQCINTESNELSQWVDHITKQLIDDVPYSGSFMGPTGMINFVSSSDDLRPKKIARKAHVDADVSGNELILPTNNELQVHIENGGTKELIKRVDHDHGLTLITLLFECAAAISDDNLGEAHQMLLELSQMVSPYGPSCAERVVAYFAKAMSSRVINSWLGICYPLINYRSVHATFQVFNNISPFIKFSHFTSNQAILEAFHRRDRVHIIDLDIMQGLQWPALFHILATRIEGPPHVRLTGMGSSMEILVDTGKQLSNFAKRLGMSFEFHPIARKFGEVDASMVQVRHEETLAVHWVQHSLYDAIGPDWKTLRLIQQLRPQIFTLVEQDILHGASFLDRFISSLHYYSSIFDSLGANFGIDDSSRYEVENCILYREINNILAIGGPSRSGEERFRHWRSELKNYLIQIPMSGNSMAQAQLMLNMFPPGHGYSLVQGEYGTLKLGWKDTCLYTASSWTCSTAAR 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5523915 5525306 - Conep20aG0080500.1 Cone20ag0784 460688
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0784 463 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 86 456 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cone20ag0784 463 ProSiteProfiles GRAS family profile. 93 457 IPR005202 -
Cone20ag0784 463 Pfam GRAS domain family 103 457 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0784 Cone-Chr20:5523915 Cone4ag1007 Cone-Chr4:8713276 2.16E-123 dispersed
Cone20ag0784 Cone-Chr20:5523915 Cone7ag1134 Cone-Chr7:8539060 6.81E-126 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45625 PF01124 MAPEG 1.60E-22 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0784 K27742 - rcu:8279702 641.343