Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0786 ATGGATTCTGCAAGGAGTTGGTTACACAAGCTTCAACCTCGTGATAAGTTGAGGCTTTCTACGAGGAAGAAGGATCATGGAGGTGGAGAAGATTCGACGGCAGATGAAGAAGAGCTTTCCAGTATTACAAAGCAGAAAGCTGCAGCTGCAAAGCAGTACATTGAGAATCATTACAAGGAACAAATGAAGAACTTTCAGGATAGGAGGGAGCGACGTAATGTATTGGAAAAGAAATTGGCCGATGCAGATGTTTCAGAGGAAGATCAAAACAATTTACTTAAGTTCTTGGAGAAGAAGGAAACTGAATATATGCGCCTGCAAAGGCACAAAATGGGCGTAGAGGATTTTTGGTTATTAACAATGATCGGCAAGGGTGCATTTGGAGAGGTTCGGGTTTGTAGGGAGAAGACAACAGGTCATGTATATGCTATGAAAAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGGCAGGTTGAACATGTCAAAGCCGAAAGAAATCTGCTTGCCGAGGTTGACAGCAATTGCATTGTTAAACTGTACTGTTCTTTTCAAGATGATGATTATCTGTATCTTATTATGGAGTATCTACCTGGCGGTGATATGATGACCTTACTTATGAGAAAAGATACACTGACCGAGGATGAAGCCAGGTTTTATGTTGGAGAAACAGTTCTGGCTATTGAATCTATCCATAAACACAATTACATTCATAGAGATATTAAGCCTGACAACTTGCTGCTCGATAGATATGGACACTTGAGACTGTCAGACTTTGGACTATGCAAACCATTAGATTGCAGTACAATCCAAGAAGGAGATTTTATGGATGGGAGCAACATTCCTGTCGCTAGACAGAATGATGGTCGCCCTACAGCTCCTACACGCACACAACAAGAGCAACTACAACACTGGCAGAAGAACCGAAGAATGCTTGCTTACTCGACTGTTGGTACACCAGACTATATTGCTCCCGAGGTCTTGTTGAAGAAAGGTTATGGCATGGAATGTGATTGGTGGTCACTTGGTGCTATAATGTATGAAATGCTCGTTGGCTACCCACCTTTCTATTCCGATGACCCCATGTCAACATGTAGGAAGATAGTAAACTGGAAAACTCATTTGAAGTTTCCTGAAGAAGCGAGGCTTTCTCCAGATGCAAAAGATCTTATTAGCAGACTGTTGTGTAATGTCAACCAGAGGCTAGGAACGCATGGTGTAGACGAGATTAAGGTCCATCCCTGGTTTCAAGGTCTCCAATGGGATAAACTATATCAAATGGATGCTGCATTTATTCCAGAGGTTAATGATGAGCTAGATACCCAAAATTTTGAAAAGTTTGAAGAGTCTGATAACCAGTGTCAGCCTTCATCCAAGACTGGTCCTTGGAGAAAGATGATTTCTTCAAAGGACATCAACTTTGTGGGTTACACGTATAAGAACTTTGAAATTGTCAATGATTACCAAGTGCCTGGAATGGCTTCTCTAAAGAAGAAGAACAACAAACCGGAAAGACCATCCATCAGGTCGCTTTTTGAGGGCGAGTCGGTGATGTCAGAAACATCAGAGACATCGGATATGTCAGAGCATAGTCAACAGAATTCTGAAGGACCTTGA 1614 41.82 MDSARSWLHKLQPRDKLRLSTRKKDHGGGEDSTADEEELSSITKQKAAAAKQYIENHYKEQMKNFQDRRERRNVLEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVEDFWLLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDDDYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHLRLSDFGLCKPLDCSTIQEGDFMDGSNIPVARQNDGRPTAPTRTQQEQLQHWQKNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKTHLKFPEEARLSPDAKDLISRLLCNVNQRLGTHGVDEIKVHPWFQGLQWDKLYQMDAAFIPEVNDELDTQNFEKFEESDNQCQPSSKTGPWRKMISSKDINFVGYTYKNFEIVNDYQVPGMASLKKKNNKPERPSIRSLFEGESVMSETSETSDMSEHSQQNSEGP 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5530425 5536088 - Conep20aG0080700.1 Cone20ag0786 460690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0786 537 CDD STKc_NDR_like 114 479 - -
Cone20ag0786 537 SUPERFAMILY Protein kinase-like (PK-like) 89 467 IPR011009 -
Cone20ag0786 537 FunFam Non-specific serine/threonine protein kinase 314 433 - -
Cone20ag0786 537 Pfam Protein kinase C terminal domain 434 478 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0786 537 Gene3D Phosphorylase Kinase; domain 1 87 199 - -
Cone20ag0786 537 MobiDBLite consensus disorder prediction 1 46 - -
Cone20ag0786 537 Gene3D Transferase(Phosphotransferase) domain 1 314 433 - -
Cone20ag0786 537 ProSiteProfiles Protein kinase domain profile. 116 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0786 537 SMART serkin_6 116 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0786 537 PANTHER SERINE/THREONINE-PROTEIN KINASE 40 483 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Cone20ag0786 537 MobiDBLite consensus disorder prediction 513 537 - -
Cone20ag0786 537 ProSiteProfiles AGC-kinase C-terminal domain profile. 416 488 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0786 537 CDD MobB_NDR_LATS-like 50 111 - -
Cone20ag0786 537 Gene3D Phosphorylase Kinase; domain 1 434 444 - -
Cone20ag0786 537 ProSitePatterns Protein kinases ATP-binding region signature. 122 145 IPR017441 GO:0005524(InterPro)
Cone20ag0786 537 FunFam Non-specific serine/threonine protein kinase 200 267 - -
Cone20ag0786 537 FunFam Non-specific serine/threonine protein kinase 87 199 - -
Cone20ag0786 537 SMART pkinase_C_6 416 480 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0786 537 ProSitePatterns Serine/Threonine protein kinases active-site signature. 235 247 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0786 537 MobiDBLite consensus disorder prediction 1 42 - -
Cone20ag0786 537 Pfam Protein kinase domain 312 415 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0786 537 Pfam Protein kinase domain 120 265 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0786 537 Gene3D Transferase(Phosphotransferase) domain 1 200 267 - -
Cone20ag0786 537 MobiDBLite consensus disorder prediction 495 537 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0786 Cone-Chr20:5530425 Cone5ag1534 Cone-Chr5:10521986 4.41E-271 dispersed
Cone15ag0165 Cone-Chr15:793624 Cone20ag0786 Cone-Chr20:5530425 2.09E-301 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82555 PF02309 AUX_IAA 1.50E-89 CL0072 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0786 K08790 - mdm:103435728 936.021