Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0800 ATGCCTACGATCTCTTTTGCATCCCTTGTCACTAAATTACTTGGCCGAATATATTACCACGTAGATGGCTCACCGAAACCCGGCTCACTACCTCCTAGCCTATCAGCCGCTGTGAATGGCGTAGCCTTCTGTGGGACACTCTCAGGACAGCTCTTCTTTGACTGGCTCAGCGACAAATTGGGTCGGAAAAAAGCATATGGGTTGACCCTTTTACTCATGATCATGTGCTCTCTTGCTTCAGGCATTTCCTTTGGGCATAGGTTCGGAATCGGCGGTGACTACCCACTTTCTGGAACTGTAATGTCGGAATATTCTAACAAGAGAACTCGGGGAGCTTTCGTTGCTGCCGCATGCAAGGGCAAAGTTCAACAGCCCAGCTTACAAAGTCGATACGATCGGTTCAACGGTCCCACAAGCCGACTATTTTTGCGGATAATTCTAATGGCAGGAGCAGTTCCCGATACTTTAACCTTCTACTGGTGCCTAAACATGCCAGAAACTGCACGGTATACTGCACTCATTGCGAAGAATGCCGAACAAGCCACAAATGATATGTACAAGGTTTTGCAAGTTGACATCGAATACGAGTCACAAAAAGTTGAGAGTGTCAAAAGACACGGGCTTCACTTGCTTGGAACCACAAGTACTTGGTTCTTACTTGATATCGCGTATTACAGTCAAAATATATTCCAAAAGGACATATTTAGTGCAATTGGATGGATCCCAGCACCAAAGACAATGAATGCAATTACTGAGCTCTATAAAATTGCAAGAGCACAAACACTCATAGCTCTATGTAGTATTGTTCCTGGATATTGGTTCATAGTTGCTTTGATTAATAAAATTGGAAGATTCAAAATTCAACTGATGGGGTTTAAGTTTGCATTGGCTATTCCTTACGGCTATTGGACTACTGATAAGAGTCACTTAATTGGGTTTGTGGTGCTTTATTCATTTACTTTCTTCTTTGGTAATTTTGGACCAAATGCTACCACGTTTGTTGTCCTGGCTGAGAATTTTTCCGGCAATGTTAAGAATCAGGACAAAGCCAAGGCAGATGCAGGGTTTCAGGCCGGAATCGGGCTTATGTTGGGAGTGATCAACTTGTTTGGTATGGGTTTAACGTTTCTAGTACCTGAATCCAAAGGGAAATCCTTCGAGGAAATGTCAGGTGAGAATGTTGAAGCTGAAAGCTAA 1197 43.27 MPTISFASLVTKLLGRIYYHVDGSPKPGSLPPSLSAAVNGVAFCGTLSGQLFFDWLSDKLGRKKAYGLTLLLMIMCSLASGISFGHRFGIGGDYPLSGTVMSEYSNKRTRGAFVAAACKGKVQQPSLQSRYDRFNGPTSRLFLRIILMAGAVPDTLTFYWCLNMPETARYTALIAKNAEQATNDMYKVLQVDIEYESQKVESVKRHGLHLLGTTSTWFLLDIAYYSQNIFQKDIFSAIGWIPAPKTMNAITELYKIARAQTLIALCSIVPGYWFIVALINKIGRFKIQLMGFKFALAIPYGYWTTDKSHLIGFVVLYSFTFFFGNFGPNATTFVVLAENFSGNVKNQDKAKADAGFQAGIGLMLGVINLFGMGLTFLVPESKGKSFEEMSGENVEAES 398
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5678006 5679429 - Conep20aG0082100.1 Cone20ag0800 460704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0800 398 Pfam Sugar (and other) transporter 32 346 IPR005828 GO:0016020(InterPro)|GO:0022857(InterPro)|GO:0055085(InterPro)
Cone20ag0800 398 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 35 388 - -
Cone20ag0800 398 Gene3D MFS general substrate transporter like domains 3 398 IPR036259 -
Cone20ag0800 398 SUPERFAMILY MFS general substrate transporter 30 389 IPR036259 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0800 Cone-Chr20:5678006 Cone4ag1129 Cone-Chr4:9741679 1.07E-171 dispersed
Cone15ag0159 Cone-Chr15:769569 Cone20ag0800 Cone-Chr20:5678006 5.86E-64 wgd
Cone17ag0612 Cone-Chr17:3378888 Cone20ag0800 Cone-Chr20:5678006 6.50E-168 wgd
Cone20ag0800 Cone-Chr20:5678006 Cone4ag0326 Cone-Chr4:1480205 3.57E-157 wgd
Cone20ag0800 Cone-Chr20:5678006 Cone7ag0999 Cone-Chr7:7720701 2.63E-39 wgd
Cone20ag0800 Cone-Chr20:5678006 Cone7ag0321 Cone-Chr7:1397719 1.24E-159 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0800 K08176 - rcu:8289773 507.294