Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0815 ATGGAAGCGGTAGAGGAAGCTAACAAAGCTGCAGTCACAAGTTGTCATAGAGTTCTAAGTCTTATTTTAGCTCAACCCAAAGAAGATCAACAGCAAGTTGAGTATTATAAAAATTTAGGGATTGAAACTAATGAAGCTGTGTTCGAGTTCAAGAGAGTTGATTCTCTTCTCAATTCTGATCATCTATGCAATCATGCAAGATTTAGAAAACGGGTTAAGAATTTTCATTTCCCTTTTCCCCAAACAATCCTTCTAGACCCTCAAATCAAAACCCATCACCACTTGAACTTACACCCTTCAGTCTGCTTAGCAAGCCCATCTTTGGAGTTGAGCTCAAACGGGAAGAACCGCCCTCTTCAATTATCCCTACAAGCACAGCCATCTTTTTCGCCCCACCCTCATAAATTGGTTCAGCAGAATATGATTAATAATCATTGTATGAGGCCTGAAAAGATGATGTTTAGAAGGAGCAATAGTGGCATAAGCCTTAACTTTGATAGCTCTAGTTGCACTCCAACAATGTCATCTACTAGATCCTTCATTTCTTCTCTTAGCATAGACGGGAGTGTGGCAAACAATTTTGATGGGAGTTCCTTTCATTTAATCGGGGCACCCCCTCAAGCTTCGGATCAGAATTCTCAACATAAAAGGAAATGTAGAGGAGATGATGGGAGTGTTAAATGTGGAAGCAGTAGTAGATGTCATTGCTCGAAAAAGAGGAAACATAGGGTGAAAAGATCAATTAAGGTACCTGCTATTAGTAACAAACTTGCAGATATACCACCTGATGATTATTCGTGGAGGAAATATGGACAGAAGCCAATCAAGGGTTCTCCTCATCCTAGGGGATATTACAAGTGTAGTAGCATGAGGGGTTGCCCGGCAAGGAAGCATGTAGAGAGGTGCTTAGAAGACCCTTCTATGCTAATCATTACATATGAAGGAGAGCATAACCATCCTAGGATACCTTCTCAATCTACAAACACATGA 990 40.61 MEAVEEANKAAVTSCHRVLSLILAQPKEDQQQVEYYKNLGIETNEAVFEFKRVDSLLNSDHLCNHARFRKRVKNFHFPFPQTILLDPQIKTHHHLNLHPSVCLASPSLELSSNGKNRPLQLSLQAQPSFSPHPHKLVQQNMINNHCMRPEKMMFRRSNSGISLNFDSSSCTPTMSSTRSFISSLSIDGSVANNFDGSSFHLIGAPPQASDQNSQHKRKCRGDDGSVKCGSSSRCHCSKKRKHRVKRSIKVPAISNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEDPSMLIITYEGEHNHPRIPSQSTNT 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5790000 5793008 - Conep20aG0083700.1 Cone20ag0815 460719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0815 329 SUPERFAMILY WRKY DNA-binding domain 259 321 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0815 329 Pfam Plant zinc cluster domain 216 259 IPR018872 -
Cone20ag0815 329 MobiDBLite consensus disorder prediction 201 225 - -
Cone20ag0815 329 ProSiteProfiles WRKY domain profile. 256 322 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0815 329 SMART WRKY_cls 261 321 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0815 329 FunFam WRKY transcription factor 65 245 322 - -
Cone20ag0815 329 Pfam WRKY DNA -binding domain 263 320 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0815 329 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 3 326 IPR044810 GO:0003700(InterPro)
Cone20ag0815 329 Gene3D WRKY domain 245 322 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0815 Cone-Chr20:5790000 Cone4ag1113 Cone-Chr4:9616935 2.31E-122 dispersed
Cone17ag0596 Cone-Chr17:3167378 Cone20ag0815 Cone-Chr20:5790000 7.65E-223 wgd
Cone20ag0815 Cone-Chr20:5790000 Cone5ag1852 Cone-Chr5:12997959 2.46E-20 wgd
Cone20ag0815 Cone-Chr20:5790000 Cone7ag1018 Cone-Chr7:7867537 1.43E-121 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45627 PF12146 Hydrolase_4 6.60E-70 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0815 - - - 0.0