Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0823 ATGGCTAACAATCCTTCCGATACTCCAGCCGACGATTTCCTAGAGCAAATTCTCGGAATTACTCCTTTCGCTTCAGCTGACCCTGGCTTGGGCGGGGCCGACGGCAGTTTGGCTGGAACGGCGGTTTCTGTTCATGCTCCGATGATGCTGCAGCTCAGCTCTGGTGACGGCTCCGGTCATATGGTCTCCATCTGCGGTGGAGTCAACGGTGGATATCATGGAACGGCTTTTCCCTTGGGCCTGAGCTTGGAGCAAGGAAAGAGTGGGTTTCTGAAACCTGAGGAGGCTTCCGGTAGTGGCAGAGGCTCCTCTGTGAAAACTATTTTTCATGGCCAACCAATGTCAAATACTGTCAAGGCAGCTCCTCATCCACCAGCAATGCGCCCAAGGGTACGGGCTAGACGAGGACATGCAACAGATCCACACAGCATTGCTGAGAGGTTGCGCAGAGAAAGAATTGCAGAGAGAATTAGGGCCTTACAGGAACTAGTTCCAGGTGTTAATAAGACGGACAGAGCTGCGATGCTTGATGAGATAGTGGATTATGTGAAGTTCCTACGCCTCCAAGTAAAGGTTCTGAGCATGAGCAGATTGGGAGGAGCCGGTGCAGTGGCACCACTTGTAACAGATATTCCACTATCATCAGTCGAGGAAGGGGGAAGCGAAGGAGGAAGAAATCAACTCGTGTGGGAAAAATGGTCAAATGACGGCACGGAAAAGCAAGTAGCTAAGCTAATGGAAGAAAATGTCGGTGCTGCTATGCAGCTCCTTCAATCTAAGGCTCTCTGTATTATGCCCATCTCCTTAGCCTCTGCAATTTACCATACACAAACACCGGACCCTTCAAGTGTGGTCAAGCCAGAAACTAACCCACCTTCATAA 882 50.45 MANNPSDTPADDFLEQILGITPFASADPGLGGADGSLAGTAVSVHAPMMLQLSSGDGSGHMVSICGGVNGGYHGTAFPLGLSLEQGKSGFLKPEEASGSGRGSSVKTIFHGQPMSNTVKAAPHPPAMRPRVRARRGHATDPHSIAERLRRERIAERIRALQELVPGVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEGGSEGGRNQLVWEKWSNDGTEKQVAKLMEENVGAAMQLLQSKALCIMPISLASAIYHTQTPDPSSVVKPETNPPS 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5833869 5839742 - Conep20aG0084500.1 Cone20ag0823 460727
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0823 293 Gene3D - 132 194 IPR036638 GO:0046983(InterPro)
Cone20ag0823 293 Pfam Helix-loop-helix DNA-binding domain 142 187 IPR011598 GO:0046983(InterPro)
Cone20ag0823 293 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 135 196 IPR036638 GO:0046983(InterPro)
Cone20ag0823 293 SMART finulus 143 192 IPR011598 GO:0046983(InterPro)
Cone20ag0823 293 MobiDBLite consensus disorder prediction 115 140 - -
Cone20ag0823 293 FunFam Basic helix-loop-helix transcription factor 132 194 - -
Cone20ag0823 293 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983(InterPro)
Cone20ag0823 293 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 88 272 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0658 Cone-Chr18:3462608 Cone20ag0823 Cone-Chr20:5833869 7.75E-15 dispersed
Cone1ag1718 Cone-Chr1:58034294 Cone20ag0823 Cone-Chr20:5833869 3.00E-79 dispersed
Cone20ag0823 Cone-Chr20:5833869 Cone5ag0543 Cone-Chr5:2302543 1.03E-83 dispersed
Cone10ag0673 Cone-Chr10:3253192 Cone20ag0823 Cone-Chr20:5833869 9.53E-83 wgd
Cone17ag0586 Cone-Chr17:3085417 Cone20ag0823 Cone-Chr20:5833869 2.28E-190 wgd
Cone20ag0823 Cone-Chr20:5833869 Cone3ag0699 Cone-Chr3:3570636 3.01E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45628 PF03055 RPE65 6.40E-95 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0823 - - - 0.0