Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0824 ATGGCGAACAAAGCCCAAATCCCTAACCGCAACTCAGCACTTATTGCTATGATTGCAGATGAGGACACAGTAGTTGGATTCCTGCTGGCTGGAGTGGGTAATGTTGACATTAGGAGGAAGACAAATTACCTCATAGTCGACTCAAAAACAACTGTTAAGCAAATTGAAGATGCATTCAAGGAGTTCACAACAAGAGAGGACATTGCAGTAGTGTTGATTAGCCAATTTACTGCAAATATGATAAGGTTCTTGGTTGATAGCTACAACAAGCCTATCCCAGCAATTTTGGAGATTCCTTCCAAGGATCACCCATATGATCCCTCACAAGATTCAGTTCTCTCTCGAGTGAAGCACCTCTTTTCGTCCGAATCAGTGGCATCAGAAAGGCGCTAA 393 43.0 MANKAQIPNRNSALIAMIADEDTVVGFLLAGVGNVDIRRKTNYLIVDSKTTVKQIEDAFKEFTTREDIAVVLISQFTANMIRFLVDSYNKPIPAILEIPSKDHPYDPSQDSVLSRVKHLFSSESVASERR 130
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5842386 5845371 - Conep20aG0084600.1 Cone20ag0824 460728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0824 130 NCBIfam V-type ATPase subunit F 12 124 IPR005772 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0824 130 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT F 1 126 - GO:0016020(PANTHER)
Cone20ag0824 130 SUPERFAMILY AtpF-like 15 118 IPR036906 GO:0034220(InterPro)
Cone20ag0824 130 Gene3D ATPase, V1 complex, subunit F 9 122 IPR036906 GO:0034220(InterPro)
Cone20ag0824 130 PIRSF V-ATP_synth_F 3 123 IPR005772 GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cone20ag0824 130 Pfam ATP synthase (F/14-kDa) subunit 15 116 IPR008218 GO:0034220(InterPro)|GO:0046961(InterPro)
Cone20ag0824 130 FunFam V-type proton ATPase subunit F 9 122 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0584 Cone-Chr17:3078693 Cone20ag0824 Cone-Chr20:5842386 2.23E-85 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0824 K02151 - gmx:100780523 231.106