Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0827 ATGGAGCTCCCAATCAACCTCAGGCCCGACGATGCGAGCCCGGAGTGGATGAACAAGGGCGACAACGCGTGGCAACTCACGGCGGCCACCCTAGTGGGCCTCCAGAGCGTGCCGGGCCTAGTCATCCTCTACGGCAGCATAGTCAAGAAGAAATGGGCCGTGAACTCCGCCTTCATGGCCCTCTACGCGTTTGCTGCAGTGCTCGTGTGTTGGGTCGGGTGGGGCTACCAAATGTCGTTCGGCAAGAAGTTCATCCACTTCATGGGCCTGCCCAACATATCACTGGACCAAAACTTCCTCTTAAGCCAGGCCTTTCTTGGGTACATACCAAATGCAACAATGGTGTATTTTCAGTTTGTTTTTGCTGCAATCACATTGATTTTGATAGCTGGGGCCTTGTTGGGAAGGATGAATTTTCATGCATGGATGCTTTTTGTGCCACTTTGGGTCACATTTTCTTATACTGTGGGCGCTTATAGTATATGGTGCCCCGATGGATGGTTGTCAAAGTGGGGCATTATTGATTATTCTGGGGGATTTGTCATTCACCTTTCTTCTGGGATTGCTGGCTTCACTGCAGCTTATTGGGTGGGACCAAGGGCAAGCAAGGACAGGGAAAGGTTCCCACCTAACAACATCCTTCTGATGTTGGCGGGGGCGGGACTACTATGGATGGGATGGACAGGGTTCAACGGCGGAGATCCATACACTGCTAGCACCGACGCGTCACTAGCCGTACTCAACACCCACATATGCGCGGCGACGAGCCTTCTGACCTGGCTCTTGCTCGACATCTTATTCTTCGGTAAACCTTCAGTGATCGGCGCGACACAGGGCATGATCACGGGCTTAGTCTGCATAACACCCGCAGCTGGGGTCGTGCAGGGCTGGGCTGCGATCATAATGGGAATGATATCGGGTTCCATCCCGTGGTACACTATGATGGTCCTTCACAAGAAGATATGGCTGTTACGACAAGTAGACGACACATTAGCCGTCTTCCACACCCACGCCGTGGCCGGAAGCCTAGGTGGCATCTTAACGGGGTTATTTGCGGAGCCAAAGTTGAGCCGGTTGTACTATCTGGTCGAGAACTGGCAGCATTACATCGGGCTCTTTTACGGGTTTCAAAGCGGGCAAGTGAGGGCCGGATTTAAACAGCTTTGGATCCAGATTGTGGGGATTTCGTTTGTAGTATGTGTAAACATTGTGACCACAAGCGTGATTTGTAACTTGATAAGCCTCATTGTGCCACTTAGGTTGAGTGAGGAGGAATTAGAGGTTGGTGATGATGCTATTCATGGAGAGGAGGCTTATGCGTTGTGGGGTGATGGTGAAAAATATGACAATTTTTCTAAGCATAACAGTAATAAGGATTATCGCATGGAGGAGTTCCCTTCAGTATCCATGCCGGCCGTTGCTTGA 1425 51.02 MELPINLRPDDASPEWMNKGDNAWQLTAATLVGLQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLVCWVGWGYQMSFGKKFIHFMGLPNISLDQNFLLSQAFLGYIPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMLFVPLWVTFSYTVGAYSIWCPDGWLSKWGIIDYSGGFVIHLSSGIAGFTAAYWVGPRASKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTASTDASLAVLNTHICAATSLLTWLLLDILFFGKPSVIGATQGMITGLVCITPAAGVVQGWAAIIMGMISGSIPWYTMMVLHKKIWLLRQVDDTLAVFHTHAVAGSLGGILTGLFAEPKLSRLYYLVENWQHYIGLFYGFQSGQVRAGFKQLWIQIVGISFVVCVNIVTTSVICNLISLIVPLRLSEEELEVGDDAIHGEEAYALWGDGEKYDNFSKHNSNKDYRMEEFPSVSMPAVA 474
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5877042 5878550 - Conep20aG0084900.1 Cone20ag0827 460731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0827 474 PRINTS Rhesus blood group protein signature 118 134 IPR002229 GO:0005886(InterPro)
Cone20ag0827 474 PRINTS Rhesus blood group protein signature 245 267 IPR002229 GO:0005886(InterPro)
Cone20ag0827 474 PRINTS Rhesus blood group protein signature 300 318 IPR002229 GO:0005886(InterPro)
Cone20ag0827 474 PRINTS Rhesus blood group protein signature 214 232 IPR002229 GO:0005886(InterPro)
Cone20ag0827 474 Pfam Ammonium Transporter Family 23 439 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone20ag0827 474 SUPERFAMILY Ammonium transporter 16 421 - -
Cone20ag0827 474 ProSitePatterns Ammonium transporters signature. 175 200 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone20ag0827 474 Gene3D Ammonium transporter AmtB like domains 7 442 IPR029020 -
Cone20ag0827 474 NCBIfam ammonium transporter 21 439 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Cone20ag0827 474 PANTHER AMMONIUM TRANSPORTER MEP2 13 450 IPR001905 GO:0005886(PANTHER)|GO:0008519(InterPro)|GO:0008519(PANTHER)|GO:0016020(InterPro)|GO:0072488(InterPro)|GO:0072488(PANTHER)
Cone20ag0827 474 FunFam Ammonium transporter 6 442 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag1035 Cone-Chr17:7841288 Cone20ag0827 Cone-Chr20:5877042 5.26E-257 dispersed
Cone20ag0827 Cone-Chr20:5877042 Cone9ag1631 Cone-Chr9:11611072 7.35E-210 dispersed
Cone20ag0827 Cone-Chr20:5877042 Cone9ag1205 Cone-Chr9:8692128 6.70E-217 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0827 K03320 - cit:102619563 799.275