Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0829 ATGTCAACATTACTAGTATTAAACACCTCCAAAGCCCAGAAGCGATGGCGATTTGCTTACACCGCAATCTATTCGTTCCGGGCTTGGCTATCTCTTTCCAAAGATATTATATCTAAACAAAATGATTACATCGAATATGGGTTCTTCCATGATTTCGAACCATTTAGTAGTTCCTCTCATTCCATTCATAAAACTGCAGAAAAAATTGAGGTCCAAAGCCAGATCATGGCGCAAAAGCGATGGAGGCTCGTCTTTCTGACGATTCGGTTTGTCCAAGCCATGGGGTCCCTTTCCAAAATGATTGCTGCAGAGAAGGAGATATTTGTAGACTCCAAACCGAAGAAGGACGATTCTTCCATCCTTCGTGCTAAGGTTAATGAGATTGGTGTTAATATTGATCAGAAAAAACTCGGGGAAATTGTGAAGGACAAGGACTTAATAGCACTTCACAGGATCGGACATGTTCAAGGCGTTGCAGATTCACTCGGAACAGATCTAGAGAGCGGAATTCGTGACGATGATGATGATGTCAGAAGGCGGCGTGAGATGTTCGGGTCGAACACTTACAAGAAGAAACCTCCAGAAGGGTTGTTTCATTTCGTCCTTGAAGCATTCAAGGACCCAACCATTATTATCCTTCTAATATGTGTCGGCTTGTCCTTTGGTTTTGGAATCAAAGAGGATGGGGCAAAGGAAGGTTGGTATGAAGGAGGAAGTATATTCGTAGCGGTGTTTCTAGTAGTGGTCGTTTCCGCTATAAGTAACTTCAGACAAGAAACTCAGTTCGAAAAGTTGTCCAAAATCGGAAACAACATCAAAGTAAAAGTATTGAGAAACGGGAGGGAAATAGAAATTTCCATCTTCGATATCGTGGTTGGGGATGTCGTGTTTTTAAATCTAGGCGACCAAATTCCAGCTGATGGGTTGTTCTTACACGGGCATTCACTCCAAGTGGATGAATCAAGCATGATGGGAGAGAGCGATCACGTAGAAGTAAATTACGAACATAACCCCTTCTTGTTTTCGGGTTCAAAAGTAGTAGATGGATATGCTCGGATGCTCGTTACCTCAGTGGGAATGGACACGGCGTGGGGTGAACTCATGAGCTCGGTTTCCCGGGATTCAACTGAACAAACACCGTTGCAAGTTCGGCTAAATAAACTTACCTCCTCTATCGGGAAGGTGGGCCTCTTAGTCGCTCTTCTAGTCCTTCTTGTTTTGCTAATCCGTTTTTTTACGGGAAATACGGAGGATAAGAACGGGAAGAGAGAGTATAATGGTAGTAAGACGAAAATAAACGACGTGTTCAATGCAATTATCCGAATTGTATCAAATGCAGTTACCATTGTAGTGGTTGCTATCCCAGAAGGGTTACCACTGGCCGTGACTCTAACACTTGCTTACTCAATGAAGAGAATGATGGGAGATAATGCCATGGTGAGGAAGCTTTCGGCTTGTGAGACAATGGGGTCCGCTACGGTTATTTGCACGGACAAGACGGGCACGTTGACTTTGAACCAAATGCAAGTTACCAAGTTTTGGCTCGGGCTAGAAAGCTTCGGGAAAGATTCTCCAACTCAAATCCCACCAGATGTTTTTGAGTTGATTTATCAAGTAGTCGGGATGAATACCACCGGAAACGTCTACAAACCTTTATCTGCATCGTCCAAACCGGAAGTTTCCGGAAGTCCAACTGAGAAAGCAATTCTCTCTTGGGCGGTTTCCGAACTAGGCATGGACATGGAGAAGTTGAAGAAATCTTATACTCTTGTCCATGTCGAGACGTTTAACTCGAAAAAGAAACGAAGCGGGGTCGCAATAAGAAAAAAAGGCTCCAGAAACAACAACATTCTCATACATTGGAAAGGAGCCGCCGAGATCATTCTAGAAATGTGTTCGAGCTATTGCGAAATCAATGGGACAATTAAACCCCTCGATGGTAATGATACACGAACAAGATAA 1962 43.43 MSTLLVLNTSKAQKRWRFAYTAIYSFRAWLSLSKDIISKQNDYIEYGFFHDFEPFSSSSHSIHKTAEKIEVQSQIMAQKRWRLVFLTIRFVQAMGSLSKMIAAEKEIFVDSKPKKDDSSILRAKVNEIGVNIDQKKLGEIVKDKDLIALHRIGHVQGVADSLGTDLESGIRDDDDDVRRRREMFGSNTYKKKPPEGLFHFVLEAFKDPTIIILLICVGLSFGFGIKEDGAKEGWYEGGSIFVAVFLVVVVSAISNFRQETQFEKLSKIGNNIKVKVLRNGREIEISIFDIVVGDVVFLNLGDQIPADGLFLHGHSLQVDESSMMGESDHVEVNYEHNPFLFSGSKVVDGYARMLVTSVGMDTAWGELMSSVSRDSTEQTPLQVRLNKLTSSIGKVGLLVALLVLLVLLIRFFTGNTEDKNGKREYNGSKTKINDVFNAIIRIVSNAVTIVVVAIPEGLPLAVTLTLAYSMKRMMGDNAMVRKLSACETMGSATVICTDKTGTLTLNQMQVTKFWLGLESFGKDSPTQIPPDVFELIYQVVGMNTTGNVYKPLSASSKPEVSGSPTEKAILSWAVSELGMDMEKLKKSYTLVHVETFNSKKKRSGVAIRKKGSRNNNILIHWKGAAEIILEMCSSYCEINGTIKPLDGNDTRTR 653
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5887976 5889937 + Conep20aG0085100.1 Cone20ag0829 460733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0829 653 Pfam Cation transport ATPase (P-type) 554 635 - -
Cone20ag0829 653 Pfam E1-E2 ATPase 273 474 - -
Cone20ag0829 653 SUPERFAMILY Calcium ATPase, transduction domain A 271 371 IPR008250 -
Cone20ag0829 653 Gene3D - 350 520 - -
Cone20ag0829 653 NCBIfam HAD-IC family P-type ATPase 437 518 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone20ag0829 653 NCBIfam HAD-IC family P-type ATPase 240 413 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone20ag0829 653 Gene3D - 156 349 - -
Cone20ag0829 653 PANTHER CATION TRANSPORTING ATPASE 115 649 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
Cone20ag0829 653 SMART Cation_ATPase_N_a_2 151 225 IPR004014 -
Cone20ag0829 653 Gene3D - 544 652 IPR023299 GO:0000166(InterPro)
Cone20ag0829 653 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 502 650 IPR023299 GO:0000166(InterPro)
Cone20ag0829 653 PRINTS P-type cation-transporting ATPase superfamily signature 319 333 - -
Cone20ag0829 653 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Cone20ag0829 653 Pfam Cation transporter/ATPase, N-terminus 154 220 IPR004014 -
Cone20ag0829 653 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Cone20ag0829 653 PRINTS Sodium/potassium-transporting ATPase signature 489 510 - -
Cone20ag0829 653 PRINTS Sodium/potassium-transporting ATPase signature 619 637 - -
Cone20ag0829 653 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 490 IPR023298 -
Cone20ag0829 653 FunFam Calcium-transporting ATPase 248 372 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0829 Cone-Chr20:5887976 Cone2ag0665 Cone-Chr2:31727612 1.02E-151 dispersed
Cone10ag0678 Cone-Chr10:3288120 Cone20ag0829 Cone-Chr20:5887976 1.07E-194 wgd
Cone17ag0579 Cone-Chr17:3019882 Cone20ag0829 Cone-Chr20:5887976 0 wgd
Cone20ag0829 Cone-Chr20:5887976 Cone4ag0278 Cone-Chr4:1262302 5.32E-214 wgd
Cone20ag0829 Cone-Chr20:5887976 Cone7ag0285 Cone-Chr7:1209868 2.79E-218 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0829 K01537 - csv:101220140 732.25