Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0830 ATGGCAGCAAGCAGTCTACGCTGCATTGCTTTCGCTTACAAGCAAATCCATGAAGAAGAATTGGAATATAAAGATCATGATAAGACCAGCTCAACGCTCAAAGAAGACGGCCTGATCTTACTAGGAATCATTGGCATCAAAGACCCATGTAGACCAGGCGTGAGAGCAGCCGGAGTTTCGATCAAAATGATAACGGGAGATAACATTTTCACGGCAAAAGCTATAGCAGCAGAATGTGGAATACTAGACCCGGATATGAAACTAAAAATCGAAGATGTAATCATAGAAGGGTCCGAATTTCGAAACTTTACACACGGAGAGAGAATGCAAAAGGTCGATAATATCCTCGTCGTGGCAAGATCCTCTCCGTTCGACAAGCTACTAATGGTCCAATGCTTGAAACAAAAGGGCCATGTGGTTGCAGTCACTGGAGACGGAACGAACGATGCACCAGCTCTAAAAGAAGCCGATATAGGACTCTCCATGGGAATAGAAGGAACCGAGGTGGCTAAGGAGAGTTCAGACATAGTCATCTTAGACGATAACTTCAACTCCGTAGCAACGGTTTTAAGGTGGGGCCGGTGCGTATACAACAACATACAAAAATTCATCCAGTTCCAGTTGACGGTTAATGTTGCTGCTCTAGTAATCAACTTTATAGCTGCACTTTCGGCAGGAAAAGTTCCTTTAACCGCCGTTCAATTGTTATGGGTGAATCTCATTATGGACACATTAGGTGCTCTGGCTTTAGCAACAGAGAAACCAACCGACGAATTAATGATGAAACCGCCCGTGGGCCGGACCGAGCCGCTCATAACAAACATCATGTGGAGGAACCTTATAGCTCAAGCCTCATACCAAATCTGTGTCCTTTTGACTTTTGAGTTTAGGGGCGAGTCGATTTTTAATGTGAGTGAGGCAGTTAAAGATACACTTATTTTCAACACATTTGTGCTGTGTCAAGTGTTCAATGAGTTCAACTCGAGGAAGATGGAGAAGATGAATGTTTTTGAAGGTATTTTGGGGAATAAGTTGTTTATATGGATTGTAGGGATGACGGTTGTTCTTCAGGCGGTCATGGTAGAGTTTTTAAAGAAGTTTGCGGATACGGAGAGGTTGAATTGGTGGCAGTGGGGAGTTTGTGTTGCTTTTGCAGTCCTTTCTTGGCCGATTGGTTGGGTTGTTAAGCTTGTGCCGGTAACGGAAAAACCATATTTTAGCTACCTTAAGCAGCTGAAAGGCTTGTTTGCTAAGATTAGATATAGTTTCTACCAAACCAGAGCTGATTCTCGCAGGCTTGGAACTCCGTAG 1311 43.71 MAASSLRCIAFAYKQIHEEELEYKDHDKTSSTLKEDGLILLGIIGIKDPCRPGVRAAGVSIKMITGDNIFTAKAIAAECGILDPDMKLKIEDVIIEGSEFRNFTHGERMQKVDNILVVARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIEGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAALSAGKVPLTAVQLLWVNLIMDTLGALALATEKPTDELMMKPPVGRTEPLITNIMWRNLIAQASYQICVLLTFEFRGESIFNVSEAVKDTLIFNTFVLCQVFNEFNSRKMEKMNVFEGILGNKLFIWIVGMTVVLQAVMVEFLKKFADTERLNWWQWGVCVAFAVLSWPIGWVVKLVPVTEKPYFSYLKQLKGLFAKIRYSFYQTRADSRRLGTP 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5889956 5891266 + Conep20aG0085200.1 Cone20ag0830 460734
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0830 436 Pfam haloacid dehalogenase-like hydrolase 39 157 - -
Cone20ag0830 436 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 49 IPR023299 GO:0000166(InterPro)
Cone20ag0830 436 Pfam Cation transporting ATPase, C-terminus 228 398 IPR006068 -
Cone20ag0830 436 PRINTS H+-transporting ATPase (proton pump) signature 143 159 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone20ag0830 436 PRINTS H+-transporting ATPase (proton pump) signature 175 200 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone20ag0830 436 Gene3D - 2 49 IPR023299 GO:0000166(InterPro)
Cone20ag0830 436 SUPERFAMILY Calcium ATPase, transmembrane domain M 193 400 IPR023298 -
Cone20ag0830 436 FunFam Plasma membrane calcium-transporting ATPase 2 50 188 - -
Cone20ag0830 436 NCBIfam HAD-IC family P-type ATPase 117 223 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cone20ag0830 436 FunFam Calcium-transporting ATPase 160 402 - -
Cone20ag0830 436 SUPERFAMILY HAD-like 36 248 IPR036412 -
Cone20ag0830 436 Gene3D - 50 188 IPR023214 -
Cone20ag0830 436 PRINTS P-type cation-transporting ATPase superfamily signature 143 162 - -
Cone20ag0830 436 PRINTS P-type cation-transporting ATPase superfamily signature 42 53 - -
Cone20ag0830 436 PRINTS P-type cation-transporting ATPase superfamily signature 167 179 - -
Cone20ag0830 436 Gene3D - 189 397 - -
Cone20ag0830 436 PANTHER CATION TRANSPORTING ATPASE 1 400 - GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0830 Cone-Chr20:5889956 Cone4ag0278 Cone-Chr4:1262302 1.25E-208 dispersed
Cone20ag0830 Cone-Chr20:5889956 Cone3ag0703 Cone-Chr3:3598745 2.53E-119 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0830 K01537 - vvi:100259561 634.795