Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0834 ATGCAGTTTCCGGCAGCAGCAGCAGCCTGCACGTCTAATTCAACTACAAACTCTTTGTCTGAGGAAGCTAATAGTGTCTCTTCTTCTGGTCCTAGACTTCATCTTGTCCGAGCTGATGATCACTTTTCTGGATTATCAATTAACCCTATGCTTTCCACTTCTACTACTTTCAATATTTCCCATAATTATCGTGATCAGCAACTCCCACAAAAGGTTAAGAAGAAGAGAAACCTTCCGGGAAACCCAGACCCAGATGCAGAAGTGATTGCACTATCGCCAAAGACTTTACTAGCGACGAACAGATTCGTGTGTGAGATATGCAACAAGGGTTTTCAGAGAGATCAGAATCTTCAACTGCATAGAAGAGGGCACAATCTGCCATGGAAGCTGAAGCAAAGGAACAACAAGGAGATGATAAGGAAGAAGGCTTATGTTTGTCCAGAACCATCTTGTGTTCACCACCATCCTTCTAGGGCTTTAGGAGATCTAACTGGGATCAAGAAACACTTTTGCAGGAAGCATGGAGAGAAGAAATGGAAGTGTGAGAAATGCTTTAAGATCTATGCTGTTCAATCTGATTGGAAAGCTCATTCGAAATCATGTGGCACTAGAGAATATAGATGCGATTGTGGAACCCTTTTCTCAAGGAAGGATAGCTTTATAACCCACAGAGCATTCTGCGATGCATTGGCTGAAGAAAGTGCAAGAGTCTCCGCAAATCAATTAGCCGCCATCTCCATCAATACTAATAATAGTTATAATTATGATGATACCAATACTACCCCTCGCCCTCAGTCTCTCTTGCCCTTCCCCACAAACCAATTACAGCAGCACTCCACTTCCTGGCCAGATCATCATCATCACCTACCTTTCCAAAACCCTAACCCTACTCTTATCATAAATCCCTTGTTAGTAGGCCCTAACCCTAATAATAACAACCCACTTCATCATCTGATCAAGTCTGAGATATTACTAGAACCAGCTCATGATCATGATGATCATCATGGCCATAATTTTCACCACCAGATGAATATCCCCCTCTCCTCCTCTAATAAGTCTTCTTCTCCATTATTCATAAACATTAATGGGTCCCACATGTTGACCAGTGGTGGTACTGCTCAACAGCAGCAAGAGGCCGCGTCAGCAAACTGCCACATGTCAGCGACTGCACTACTCCAGAAGGCTGCATCGGTTGGTCCCTCTGCAGTATCGAGCAGCAGCTGCCCTGATCGTCATCTTCATGGCCAGTATTACTACTCTGCGGGTCATGATCACATGATGACCGCGACCCATCACCGCGATCTAAACATGAACACAGTGAATCAAGTCCCACTACTAGTAACGGATGATCACGATATTTCCACGTGGCAGAAGAGTGATGGCAGTTTGACCAGGGACTTTCTGGGTTTGACTCATGATCATCATCACCATTATCAAGGAGCTGGAGCTGTCTCGATTAGTACTTCCACTGGAATCTGCCGTGGAAATGGAAATGCTGGCCATGACTATGATCATGAAGTTAACGTTAGAATGAGCGTGAAGGATACGCTAACGTACACCAGAGGCATAGGTTTTGATGATCATCACGGACGTGTTCATCATCACACAGGTTTTGGATTCTCTGAGCCAGCTGCTAATTCAGATCTTCAAGCATTGGGTGACTTCTAA 1668 44.42 MQFPAAAAACTSNSTTNSLSEEANSVSSSGPRLHLVRADDHFSGLSINPMLSTSTTFNISHNYRDQQLPQKVKKKRNLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEMIRKKAYVCPEPSCVHHHPSRALGDLTGIKKHFCRKHGEKKWKCEKCFKIYAVQSDWKAHSKSCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARVSANQLAAISINTNNSYNYDDTNTTPRPQSLLPFPTNQLQQHSTSWPDHHHHLPFQNPNPTLIINPLLVGPNPNNNNPLHHLIKSEILLEPAHDHDDHHGHNFHHQMNIPLSSSNKSSSPLFININGSHMLTSGGTAQQQQEAASANCHMSATALLQKAASVGPSAVSSSSCPDRHLHGQYYYSAGHDHMMTATHHRDLNMNTVNQVPLLVTDDHDISTWQKSDGSLTRDFLGLTHDHHHHYQGAGAVSISTSTGICRGNGNAGHDYDHEVNVRMSVKDTLTYTRGIGFDDHHGRVHHHTGFGFSEPAANSDLQALGDF 555
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 5986896 5989595 - Conep20aG0085800.1 Cone20ag0834 460738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0834 555 SUPERFAMILY beta-beta-alpha zinc fingers 101 199 IPR036236 -
Cone20ag0834 555 MobiDBLite consensus disorder prediction 1 31 - -
Cone20ag0834 555 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 140 174 - -
Cone20ag0834 555 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Cone20ag0834 555 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 205 242 - -
Cone20ag0834 555 Pfam Zinc-finger of C2H2 type 102 124 IPR013087 -
Cone20ag0834 555 MobiDBLite consensus disorder prediction 255 280 - -
Cone20ag0834 555 Gene3D Classic Zinc Finger 81 150 - -
Cone20ag0834 555 MobiDBLite consensus disorder prediction 255 284 - -
Cone20ag0834 555 FunFam protein indeterminate-domain 5, chloroplastic-like 157 236 - -
Cone20ag0834 555 FunFam protein indeterminate-domain 12-like 81 150 - -
Cone20ag0834 555 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 60 477 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cone20ag0834 555 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 178 202 - -
Cone20ag0834 555 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 124 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone18ag0291 Cone-Chr18:1420318 Cone20ag0834 Cone-Chr20:5986896 2.28E-99 dispersed
Cone20ag0834 Cone-Chr20:5986896 Cone3ag0282 Cone-Chr3:1468105 1.06E-101 dispersed
Cone17ag0574 Cone-Chr17:2964295 Cone20ag0834 Cone-Chr20:5986896 1.75e-318 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45630 PF01063 Aminotran_4 1.40E-31 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0834 K25870 - csv:101208253 434.106