Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0852 ATGAGCCGGGTTTTTTCGAGAGATAGAGACGTGCCTACAAAGAAGGAAGAGTGGGAGATTGATCTGTCTAAGCTGGATATAAGACTTCTTGTGGCTCATGGCACATATGGAACTGTCTACAAAGGCATCTATGACGGACAAGATGTTGCCATAAAAGTGTTGGACTGGGGAGAGGATGGTATGACCACCGCTGTTGAAACTGCTGCTCTTCGAGCTTCATTTCGGCACGAAGTTGCTGTTTGGCATAAGCTCGACCACCGTAATTATCTTCCGGGCGGGACCCTCAAGAACTATTTGATCAGAAACCGTAGAAAGAAGCTCGCACTTAAGATTGTGATTCAACTTGCATTGGATCTTGCCAGAGGGTTAATTTATCTTCACTCGAAAAAGATTGTTCACCGTGACATTAAAACGGAAAACTTGTTACTAGATGCTCATAGAACACTAAAAATCGTTGATTTTGGAGTTGCTCGGGTTGAAGCTCAGAATCCAAGGGATATGACCGGTGAAACTGGTACCCTTGGTTATATGGCGCCAGAGGTCCTTGATGGTAAACCTTACAATAGAAGATGTGATGTTTATAGTTTCGGTATAATGGGAGACATATTGTTGCGACATGCCTTATCCTGA 630 43.65 MSRVFSRDRDVPTKKEEWEIDLSKLDIRLLVAHGTYGTVYKGIYDGQDVAIKVLDWGEDGMTTAVETAALRASFRHEVAVWHKLDHRNYLPGGTLKNYLIRNRRKKLALKIVIQLALDLARGLIYLHSKKIVHRDIKTENLLLDAHRTLKIVDFGVARVEAQNPRDMTGETGTLGYMAPEVLDGKPYNRRCDVYSFGIMGDILLRHALS 209
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6216207 6217722 + Conep20aG0087800.1 Cone20ag0852 460756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0852 209 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 21 199 IPR051681 GO:0004674(PANTHER)|GO:0005886(PANTHER)
Cone20ag0852 209 Gene3D Transferase(Phosphotransferase) domain 1 89 204 - -
Cone20ag0852 209 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0852 209 Pfam Protein kinase domain 33 200 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0852 209 SMART serkin_6 25 209 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0852 209 ProSiteProfiles Protein kinase domain profile. 25 209 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0852 209 Gene3D Phosphorylase Kinase; domain 1 5 88 - -
Cone20ag0852 209 SUPERFAMILY Protein kinase-like (PK-like) 13 199 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0852 Cone-Chr20:6216207 Cone2ag0900 Cone-Chr2:34824127 4.05E-92 dispersed
Cone20ag0852 Cone-Chr20:6216207 Cone4ag0260 Cone-Chr4:1162492 6.88E-107 wgd
Cone20ag0852 Cone-Chr20:6216207 Cone7ag0269 Cone-Chr7:1118657 8.87E-107 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82558 PF06094 GGACT 5.70E-10 CL0278 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0852 - - - 0.0