Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0883 ATGATGATTCCTTGGGGAGGCGTAAGTTGCTGTTTGAGCGCGGCTGCTCTGTATCTTCTCGGAAGGAGTAGTGGCAGGGATGCAGAGCTATTGAAATCAGTTAAGCGGGTCAATCAGTTGAAGGAATTGGCCCAATTACTTGATGTTGAGTGTATAGTACCTTTGGTTGTGGCAATTTCTGGAAGAGTTGGCTCTGAAAACCCGATCAGCTGTGAGTTCAGTGGCTTACGGGGTGTGATTGTAGAGGAAACGGCAGAACAACATTTTCTGAAACACAATGATGCGGGTTCATGGATACAAGATTCTGCTCTGATGCTCTCCATGAGTAAAGAGGTCCCCTGGTACCTGGATGATGGGACTGCTAGGGCATTTGTGGTGGGAGCACGTGCTGCCAATGGCTTCTTATTACCAGTAGCGAGTGAGGTGTTTGAAGAATCCGGTAGATCCCTTGTACGTGGAACATTAGATTATCTCCAAGGTCTTAAGATGCTTGGAGTTAAGAGGATTGAGCGGGTACTTCCAACTGGAACTTCCTTGACTGTAGTTGGTGAGGCTGCCAAAGATGATGTTGGTACCGTTCGGATCCAGAGACCCCACAAGGGGCCATTCTATGTCACCCCAAAAACAATTGACCAGCTCATTGCCAATCTTGGGAAGTGGGCAAGGTGGTACAAGTATGCCTCTATGGGTTTAACAGTATTTGGTATATATCTTATTGCTAAGCATGGCATTCAATTTATAATGGAAAGAAAGCGCCGTTGGGAATTGCAGAGAAGAGTTCTAGCTGCTGCTGCTAAAAGATCAGGCCAAGAGAGTGAAGGTCAAAATGAACAGGCTGACACAATGTTAGATGGTACCAAGAGAGATCGGCTACCAGATCTCTGTGTAATATGCCTTGAACAAGACTATGATGCTGTTTTTGTCCCGTGTGGTCATATGTGCTGCTGTGTAACATGTTCCTCCCACTTGACCAACTGTCCGCTTTGTCGGCGAAGAATTGAACAAGTCGTTAAGACTTTCCGTCATTGA 1029 46.16 MMIPWGGVSCCLSAAALYLLGRSSGRDAELLKSVKRVNQLKELAQLLDVECIVPLVVAISGRVGSENPISCEFSGLRGVIVEETAEQHFLKHNDAGSWIQDSALMLSMSKEVPWYLDDGTARAFVVGARAANGFLLPVASEVFEESGRSLVRGTLDYLQGLKMLGVKRIERVLPTGTSLTVVGEAAKDDVGTVRIQRPHKGPFYVTPKTIDQLIANLGKWARWYKYASMGLTVFGIYLIAKHGIQFIMERKRRWELQRRVLAAAAKRSGQESEGQNEQADTMLDGTKRDRLPDLCVICLEQDYDAVFVPCGHMCCCVTCSSHLTNCPLCRRRIEQVVKTFRH 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6424061 6428764 + Conep20aG0091000.1 Cone20ag0883 460787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0883 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 336 - -
Cone20ag0883 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Cone20ag0883 342 PANTHER - 2 339 IPR044231 GO:0004842(InterPro)|GO:0016567(InterPro)
Cone20ag0883 342 Pfam E3 Ubiquitin ligase 86 235 IPR022170 GO:0004842(InterPro)|GO:0006996(InterPro)|GO:0016567(InterPro)
Cone20ag0883 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 264 341 IPR013083 -
Cone20ag0883 342 CDD RING-HC_LRSAM1 295 338 - -
Cone20ag0883 342 SUPERFAMILY RING/U-box 294 336 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone15ag0163 Cone-Chr15:785404 Cone20ag0883 Cone-Chr20:6424061 4.69E-09 dispersed
Cone17ag0527 Cone-Chr17:2618620 Cone20ag0883 Cone-Chr20:6424061 7.08E-246 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0883 K15688 - csv:101218196 597.816