Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0888 ATGAAGAATGGAAGTCTTCATGATCATTTGTTTGGGTCTTTTGGTAAGAAGCTTAGTTGGCCGATTTGGCAAAATACCGCTCTAGGAACGGCAAGAGGATTGGCGTATTTGCATTATGGAGCTCAACCCGGTGTTATCCATAGGGATATTAAAGCAAGTAACATTCTTTTAGATGAAAAATTTGAGGCTAAGGTTGCTGATTTTGGGCTGGCTAAGTTTACGCCAGAAGGAATGACTCATATGAGCACAAGAGTGGCGGGAACTATGTGTTTTCTTGCGCCGGAATATGCTTTATACGGGCAGTTATCGGAAATAAGTGATGTGTATAGCTTTGGTGTTATTCTGTTTGAGCTTTTGAGTGGGAAGAAAGCACTTGTTGTGAATAATGAAGGCCAGCCTTATTTAGTGACTGATTGGGCGTGGGCTCTGGTGAAGAAAGGAAGGGCTTTGGATATTATTGATGAGGGTATTCCGGAGCTAGGTAAACCTGAGGTTCTTGAAAAGTATGTGCTAGTTGCCGTGCTTTGTTCTCATCCACGGCTGTATGCTAGGCCTACTATGGATCAGGTAGTAAAAATGTTGGAAACGGATTTATCGGTTCCTACAATTCCAGAAAGGCTGATCCCTCTTGTCGCCGCGATTGAGAGGTCAATGAGTAGTGGTGGTGGTGGGTCCGGTCAACCGGGTTGCAGCCGTTTACGGCGGAAAGGGACTGTCTTTCTGCCCATAAGGAAGAAAGAATTCGTGAATGGTGAAACGGTGACAACAGAGAGTGTTATAAGGCCCATAAACCAAAAAGAAGCGAGACGAGTGCTCATTGGGTCTGGGTCAGTTTCAGTATGA 843 44.72 MKNGSLHDHLFGSFGKKLSWPIWQNTALGTARGLAYLHYGAQPGVIHRDIKASNILLDEKFEAKVADFGLAKFTPEGMTHMSTRVAGTMCFLAPEYALYGQLSEISDVYSFGVILFELLSGKKALVVNNEGQPYLVTDWAWALVKKGRALDIIDEGIPELGKPEVLEKYVLVAVLCSHPRLYARPTMDQVVKMLETDLSVPTIPERLIPLVAAIERSMSSGGGGSGQPGCSRLRRKGTVFLPIRKKEFVNGETVTTESVIRPINQKEARRVLIGSGSVSV 280
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6476040 6476986 - Conep20aG0091600.1 Cone20ag0888 460792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0888 280 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 1 202 - -
Cone20ag0888 280 SMART serkin_6 1 194 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0888 280 PANTHER OS01G0750732 PROTEIN 1 197 IPR050885 -
Cone20ag0888 280 SUPERFAMILY Protein kinase-like (PK-like) 1 195 IPR011009 -
Cone20ag0888 280 Gene3D Transferase(Phosphotransferase) domain 1 1 201 - -
Cone20ag0888 280 Pfam Protein kinase domain 1 130 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0888 280 ProSiteProfiles Protein kinase domain profile. 1 203 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0888 280 ProSitePatterns Serine/Threonine protein kinases active-site signature. 45 57 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0888 Cone-Chr20:6476040 Cone3ag0933 Cone-Chr3:4830994 5.08E-68 dispersed
Cone11ag0886 Cone-Chr11:7301570 Cone20ag0888 Cone-Chr20:6476040 6.83E-99 wgd
Cone17ag0465 Cone-Chr17:2222402 Cone20ag0888 Cone-Chr20:6476040 2.88E-139 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82559 None None None None Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0888 - - - 0.0