Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0909 | ATGTCCGTGGGACTTGGATCAGAGGATACACAAGCTAATGTGAATGCTATCACATTATGCGTGTTGCTTCTTTCTACTTGCATTGTAATCGGCAATCTATTTAAGAAGAGCAGATGGATGACTGAGTCGGTTACTGCTCTAGCCATTGGTCTCAGCACTGGATTTATCATTCTAGTAACCACTGGAGGAAAAAGTTCTCACATTTTGGTCTTTGATGAACAACTTTTCTTTATCTATCTTCTGCCACCTATTATATTTAATGCTGGGTTCCAGGTTAAGAAGAAGCAGTTTTTCAGAAACTTTTGGACAATCATATTGTTTGGTGCTGTCGGTACTTTGATGTCCTTTTCTGTCATATCACTAGGTGCATTTCAGCTTTTGAAGAACTTGGATATAGGCACCTTGGAGACAGCTGATTATTTTGCCCTTGGAGCAATATTTACAGCTACAGACTCTGTTTGCACCTTGCAGGTTCTTAATCAGGATGAGACACCTTTACTATACAGTTTAGTCTTTGGTGAAGGAGTAGTCAATGATGCCACAACTATAGTTCTTTTCAATGCAATTAAGAGATATGACCTCTCCCACTTGACTCCAACCAACTTGATGCAATTTTCTGGAAGTTTTTTATATATGTTCTTGATAAGCACATTGTTGGGAGTAGCAGTAGGATTGGCCACTGCGTTACTCATTAAGAAGCTTTACCATGGCAGGGAATCTACTGATGGCGAAGTGGCTCTGATGATTTTAATGGCTTACCTTTCGTATATGATAGCTGAATTGTGCAGTCTAAGTGGCATTCTCGGTGTCTTCTTCTGTGGGATTGTCATGTCCCATTACGCCTGGCATATTGTGACTGATGAATCAAGAGTTACGACCAAACATGCTTTTGCAACATTATCATTCATTTCGGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAGAAGTGGAAAGTTGTACAAAATAGTCCCGGGACATCTTTTGCAGTGAGCTCGATCCTGTTTTTTCTCGTTCTACTTGGAAGAGCTGCTTTCGTGTTTCCCCTTTCTTTTCTATCCAACTTGGCTAGGAAGACTGAAAAAATTGGATTTAAACAGCAGGTTACAATTTTGTGGTCTGGGCTTATGAGAGGTGCTGTATCTGTGGCACTAGCCTATAATCAGTTCACACTGTCAGGACACACTCAACTACGAGGAAATGCAACCATGATTACTAGCACCATTTCAGTCGTCCTCTTCACTAATGTGGTATGTGGATTATTGACCAAGCATCTTGTAAGGTGTTTACTTCCAAGAGAAGAACAGACAAGGAGCACAACCTTCGATAAAAAATCATCTCCTCAGTTATCTCTAAATTCTCCGCTTCTATCGAATTTGGAAGATCCAGAATACAAAAAGAATCCAAGTTTTAGAATGATCTTGACAACCTCATATAGCCCTGTTCATCACTACTGGAAAGAGTTTGACAATACTTACATGCGTCCGGTTTTCGGTGGGCCACCACACCACATTTCAAGTTCACTGAGGGAGGACAGCTTGGAGGAGGATAGTATACTCCAGTAA | 1578 | 40.62 | MSVGLGSEDTQANVNAITLCVLLLSTCIVIGNLFKKSRWMTESVTALAIGLSTGFIILVTTGGKSSHILVFDEQLFFIYLLPPIIFNAGFQVKKKQFFRNFWTIILFGAVGTLMSFSVISLGAFQLLKNLDIGTLETADYFALGAIFTATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATTIVLFNAIKRYDLSHLTPTNLMQFSGSFLYMFLISTLLGVAVGLATALLIKKLYHGRESTDGEVALMILMAYLSYMIAELCSLSGILGVFFCGIVMSHYAWHIVTDESRVTTKHAFATLSFISEIFIFLYVGMDALDIEKWKVVQNSPGTSFAVSSILFFLVLLGRAAFVFPLSFLSNLARKTEKIGFKQQVTILWSGLMRGAVSVALAYNQFTLSGHTQLRGNATMITSTISVVLFTNVVCGLLTKHLVRCLLPREEQTRSTTFDKKSSPQLSLNSPLLSNLEDPEYKKNPSFRMILTTSYSPVHHYWKEFDNTYMRPVFGGPPHHISSSLREDSLEEDSILQ | 525 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 6560461 | 6564413 | - | Conep20aG0093700.1 | Cone20ag0909 | 460813 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0909 | 525 | PRINTS | Na+/H+ exchanger signature | 104 | 112 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone20ag0909 | 525 | PRINTS | Na+/H+ exchanger signature | 89 | 103 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone20ag0909 | 525 | PRINTS | Na+/H+ exchanger signature | 144 | 154 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone20ag0909 | 525 | PRINTS | Na+/H+ exchanger signature | 75 | 86 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone20ag0909 | 525 | PANTHER | SODIUM/HYDROGEN EXCHANGER | 9 | 513 | IPR018422 | GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro) | |
| Cone20ag0909 | 525 | NCBIfam | sodium/hydrogen exchanger 3 | 16 | 450 | IPR004709 | GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cone20ag0909 | 525 | Pfam | Sodium/hydrogen exchanger family | 25 | 432 | IPR006153 | GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro) | |
| Cone20ag0909 | 525 | Gene3D | - | 136 | 188 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0909 | Cone-Chr20:6560461 | Cone7ag0181 | Cone-Chr7:761678 | 3.27E-218 | dispersed | |
| Cone17ag0478 | Cone-Chr17:2302988 | Cone20ag0909 | Cone-Chr20:6560461 | 1.43E-155 | wgd | |
| Cone20ag0909 | Cone-Chr20:6560461 | Cone4ag0176 | Cone-Chr4:826177 | 1.10E-219 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0909 | - | - | - | 0.0 |