Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0909 ATGTCCGTGGGACTTGGATCAGAGGATACACAAGCTAATGTGAATGCTATCACATTATGCGTGTTGCTTCTTTCTACTTGCATTGTAATCGGCAATCTATTTAAGAAGAGCAGATGGATGACTGAGTCGGTTACTGCTCTAGCCATTGGTCTCAGCACTGGATTTATCATTCTAGTAACCACTGGAGGAAAAAGTTCTCACATTTTGGTCTTTGATGAACAACTTTTCTTTATCTATCTTCTGCCACCTATTATATTTAATGCTGGGTTCCAGGTTAAGAAGAAGCAGTTTTTCAGAAACTTTTGGACAATCATATTGTTTGGTGCTGTCGGTACTTTGATGTCCTTTTCTGTCATATCACTAGGTGCATTTCAGCTTTTGAAGAACTTGGATATAGGCACCTTGGAGACAGCTGATTATTTTGCCCTTGGAGCAATATTTACAGCTACAGACTCTGTTTGCACCTTGCAGGTTCTTAATCAGGATGAGACACCTTTACTATACAGTTTAGTCTTTGGTGAAGGAGTAGTCAATGATGCCACAACTATAGTTCTTTTCAATGCAATTAAGAGATATGACCTCTCCCACTTGACTCCAACCAACTTGATGCAATTTTCTGGAAGTTTTTTATATATGTTCTTGATAAGCACATTGTTGGGAGTAGCAGTAGGATTGGCCACTGCGTTACTCATTAAGAAGCTTTACCATGGCAGGGAATCTACTGATGGCGAAGTGGCTCTGATGATTTTAATGGCTTACCTTTCGTATATGATAGCTGAATTGTGCAGTCTAAGTGGCATTCTCGGTGTCTTCTTCTGTGGGATTGTCATGTCCCATTACGCCTGGCATATTGTGACTGATGAATCAAGAGTTACGACCAAACATGCTTTTGCAACATTATCATTCATTTCGGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAGAAGTGGAAAGTTGTACAAAATAGTCCCGGGACATCTTTTGCAGTGAGCTCGATCCTGTTTTTTCTCGTTCTACTTGGAAGAGCTGCTTTCGTGTTTCCCCTTTCTTTTCTATCCAACTTGGCTAGGAAGACTGAAAAAATTGGATTTAAACAGCAGGTTACAATTTTGTGGTCTGGGCTTATGAGAGGTGCTGTATCTGTGGCACTAGCCTATAATCAGTTCACACTGTCAGGACACACTCAACTACGAGGAAATGCAACCATGATTACTAGCACCATTTCAGTCGTCCTCTTCACTAATGTGGTATGTGGATTATTGACCAAGCATCTTGTAAGGTGTTTACTTCCAAGAGAAGAACAGACAAGGAGCACAACCTTCGATAAAAAATCATCTCCTCAGTTATCTCTAAATTCTCCGCTTCTATCGAATTTGGAAGATCCAGAATACAAAAAGAATCCAAGTTTTAGAATGATCTTGACAACCTCATATAGCCCTGTTCATCACTACTGGAAAGAGTTTGACAATACTTACATGCGTCCGGTTTTCGGTGGGCCACCACACCACATTTCAAGTTCACTGAGGGAGGACAGCTTGGAGGAGGATAGTATACTCCAGTAA 1578 40.62 MSVGLGSEDTQANVNAITLCVLLLSTCIVIGNLFKKSRWMTESVTALAIGLSTGFIILVTTGGKSSHILVFDEQLFFIYLLPPIIFNAGFQVKKKQFFRNFWTIILFGAVGTLMSFSVISLGAFQLLKNLDIGTLETADYFALGAIFTATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATTIVLFNAIKRYDLSHLTPTNLMQFSGSFLYMFLISTLLGVAVGLATALLIKKLYHGRESTDGEVALMILMAYLSYMIAELCSLSGILGVFFCGIVMSHYAWHIVTDESRVTTKHAFATLSFISEIFIFLYVGMDALDIEKWKVVQNSPGTSFAVSSILFFLVLLGRAAFVFPLSFLSNLARKTEKIGFKQQVTILWSGLMRGAVSVALAYNQFTLSGHTQLRGNATMITSTISVVLFTNVVCGLLTKHLVRCLLPREEQTRSTTFDKKSSPQLSLNSPLLSNLEDPEYKKNPSFRMILTTSYSPVHHYWKEFDNTYMRPVFGGPPHHISSSLREDSLEEDSILQ 525
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
20 6560461 6564413 - Conep20aG0093700.1 Cone20ag0909 460813
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0909 525 PRINTS Na+/H+ exchanger signature 104 112 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0909 525 PRINTS Na+/H+ exchanger signature 89 103 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0909 525 PRINTS Na+/H+ exchanger signature 144 154 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0909 525 PRINTS Na+/H+ exchanger signature 75 86 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0909 525 PANTHER SODIUM/HYDROGEN EXCHANGER 9 513 IPR018422 GO:0005886(PANTHER)|GO:0006812(InterPro)|GO:0015385(PANTHER)|GO:0015385(InterPro)|GO:0015386(PANTHER)|GO:0016020(InterPro)|GO:0051453(PANTHER)|GO:0071805(PANTHER)|GO:0098719(PANTHER)|GO:1902600(InterPro)
Cone20ag0909 525 NCBIfam sodium/hydrogen exchanger 3 16 450 IPR004709 GO:0006814(InterPro)|GO:0006885(InterPro)|GO:0015385(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cone20ag0909 525 Pfam Sodium/hydrogen exchanger family 25 432 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cone20ag0909 525 Gene3D - 136 188 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0909 Cone-Chr20:6560461 Cone7ag0181 Cone-Chr7:761678 3.27E-218 dispersed
Cone17ag0478 Cone-Chr17:2302988 Cone20ag0909 Cone-Chr20:6560461 1.43E-155 wgd
Cone20ag0909 Cone-Chr20:6560461 Cone4ag0176 Cone-Chr4:826177 1.10E-219 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0909 - - - 0.0