Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0910 ATGTCTCTTAAGAGTATCATTGAGGATATGAAGGGTGAAATTGGGAGCATTTCTAGGAAAAGATTTGAGCTGAAGTTAGGGTATGGGATGAGGTCGAGGTCACACCGAGTGGTGCAAGATACCTCAGTTTCAGTTTCGGTTTCGGTTTCGGTCGATGCATTAAAGCAGAGCTGTTGGGCTAATATGCCCCTTGAGCTTTTGAGGGATGTTCTTATGAGGATAGAGGCTTCTAATGATACATGGTCTTCTCGGAAAAATGTTGTTTCTTGTGCTGGGGTTTGCCGGAATTGGAGAGAAATTGTCAGAGAAATTGTTCAGTCCCCACAGGTTTCCGGAAAGTTGACTTTCCCAATCTCCTTGAAGCAGCCTGGCCCAAGGAACTCACTTTTCCAATGTTATATAAAACGGAATCATAGCAATCAAACGTATTATCTTTACCTCAGTTTAAATCAAGCTTCGACTGATGATGGGAAGTTCCTTCTTGCTGCAAGTAAGTGTAGACGCCCAACTTGCACTGATTACATAATCTCTTTGAATTATGATGATGTGGCAAAAGGGAGCAGCACTTATGTTGGAAGGTTGAGATCAAATTTTCTGGGGACCAAATTCATGGTCTATGATGTACAACCTCCAACTCCAAGTACTGAAATCAAAGTCAGCAAGTGTCATTCTACTTCTACCAGGCTGGTAAACTTGAAACAGACCTCATCCAAAATCCCTCCTGGAAATTATCCGGTCGCTCAAATATCTTATGATCTGAATGTCTTGGGTTCGAGGGGTCCTAGGAGAATGCAGTGTCTTATGAATGCCATCCCTTCTTCCTCCCTCGATCCAGGTGGTTCAGCTCCCACACAAACTGAATTCCTACTCATCAATCTGGATAGAATTCCATCCCTCCCGCTTTTCCGATCAAAATCAAGCCAGATAGAGAATTCCCAATTTGGAATTGCAATGGGCCAAAATGATGGCCGCCCATTAGTGCTGAAGAATAAGGCCCCGAGCTGGCATGAACAACTCCAATGCTGGTGCTTGAACTTCAATGGACGAGTAACAGTCCCTTCTGTGAAGAACTTCCAGCTTGTTGCTGCCCAGGAAAATGGGGCAGCCGGGCAGCCGAACAACGAGAATGTAATCCTCCAGTTTGGAAAAGTTGACAAGGATGTTTTCACCATGGATTATCAGTATCCAATCTCAGCTTTCCAAGCCTTTGCCATTTGCCTGAGTAGCTTTGACACAAAAATCGCTTGTGAATGA 1254 44.1 MSLKSIIEDMKGEIGSISRKRFELKLGYGMRSRSHRVVQDTSVSVSVSVSVDALKQSCWANMPLELLRDVLMRIEASNDTWSSRKNVVSCAGVCRNWREIVREIVQSPQVSGKLTFPISLKQPGPRNSLFQCYIKRNHSNQTYYLYLSLNQASTDDGKFLLAASKCRRPTCTDYIISLNYDDVAKGSSTYVGRLRSNFLGTKFMVYDVQPPTPSTEIKVSKCHSTSTRLVNLKQTSSKIPPGNYPVAQISYDLNVLGSRGPRRMQCLMNAIPSSSLDPGGSAPTQTEFLLINLDRIPSLPLFRSKSSQIENSQFGIAMGQNDGRPLVLKNKAPSWHEQLQCWCLNFNGRVTVPSVKNFQLVAAQENGAAGQPNNENVILQFGKVDKDVFTMDYQYPISAFQAFAICLSSFDTKIACE 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6566008 6568922 + Conep20aG0093800.1 Cone20ag0910 460814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0910 417 Pfam Tub family 120 412 IPR000007 -
Cone20ag0910 417 CDD F-box_AtTLP-like 59 103 - -
Cone20ag0910 417 SUPERFAMILY Tubby C-terminal domain-like 108 417 IPR025659 -
Cone20ag0910 417 Gene3D Tubby Protein; Chain A 117 417 IPR025659 -
Cone20ag0910 417 PRINTS Tubby superfamily signature 346 362 IPR000007 -
Cone20ag0910 417 PRINTS Tubby superfamily signature 374 393 IPR000007 -
Cone20ag0910 417 PRINTS Tubby superfamily signature 190 214 IPR000007 -
Cone20ag0910 417 PRINTS Tubby superfamily signature 243 270 IPR000007 -
Cone20ag0910 417 PRINTS Tubby superfamily signature 174 190 IPR000007 -
Cone20ag0910 417 PRINTS Tubby superfamily signature 328 345 IPR000007 -
Cone20ag0910 417 PRINTS Tubby superfamily signature 395 417 IPR000007 -
Cone20ag0910 417 Pfam F-box domain 59 102 IPR001810 GO:0005515(InterPro)
Cone20ag0910 417 ProSitePatterns Tub family signature 2. 402 417 IPR018066 -
Cone20ag0910 417 PANTHER TUBBY-RELATED 53 416 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0910 Cone-Chr20:6566008 Cone7ag0180 Cone-Chr7:753931 5.17E-182 dispersed
Cone14ag0786 Cone-Chr14:4593835 Cone20ag0910 Cone-Chr20:6566008 4.31E-164 wgd
Cone17ag0479 Cone-Chr17:2307427 Cone20ag0910 Cone-Chr20:6566008 2.47E-277 wgd
Cone20ag0910 Cone-Chr20:6566008 Cone4ag0175 Cone-Chr4:819037 3.90E-177 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45637 PF02230 Abhydrolase_2 1.30E-39 CL0028 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0910 K19600 - rcu:8287183 615.15