Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0922 | ATGGATCAGTACGGACGGATGAGAAACGGGTCGGATCAGCAACATGAATGGAGCTCCGCTGGTGAAGGAGAAGGAGGAGGAGGAGGAGGCGGCGGCGGAACTGGCCTTGAAGAATCGATGTGGCAGATGGGTTTGACGGCCAACGGAGCATCCTACCCGGAGCTTCCCGGCGTGCCCAACTGTGTATACTATATGCGAACTGGGTTCTGCGGTTATGGTAGTAGATGCCGCTACAATCACCCTCCTGATCGTGCTGCTGTTGTGGCTGCAGTAAGAGTGACGGGTGAGTACCCCCTTAGGCCAGGGGAGCCTGAATGTCAGTATTATTTAAAAACTTGGACCTGTAAATATGGTGCATCTTGCAAGTTTCACCACCCCAAACACGGAGTTGGATCCGTGAATCAGGCCCCACTTAATCTCCGTGGATACCCACTTAGACCGGGCGAGAGGGAATGCTCCTACTATTTAAAATCAGGGCAGTGCAAATATGGTATAGCCTGCAAATTCCATCACCCTCAAATGAACAGCATACCAATGCAGCCGCCTTCCACTCCTCAATTTTACCATCCACAATTCCATCATTCTCCTTTACTCTCTCTACCCGAACAATACGGGTCCACATCCACTAGTTTGAGGGTAGTAACCAGACCACCTGTGCTACCTAATTCTTACATGCAAGGACCGTACGGCCCTGTATTGCTCTCCCCCGGAGTTGTTCCCATTTCTGGGTGGACCTCATACTCGGCACCTGTAACACCCTCCGTGCTATCTCCTGGTGCTGCTCATATGTCTTCTTCTTCAACAACTTCCTTTCTGAGACCTTATACTCCCATAACTTCACCTGTAGTAGGAACCTCAGGTAGTAGCATCCAGAGTGCGAAAGTATTTCCGGCAAGACCGTGTGAACCTGAATGCCAGTATTATCTAAAAACAGGGAACTGTAAATTCGGATCATCTTGTCGGTTTCATCATCCTCAGGACCTGGTCCCACCAAGTGCCGGTTGTGTCCTAAGTCCACTTGGACTGCCCTGTCGCCCGGGGATGCAACCTTGCACATTCTACTTGCAAAATGGACACTGTAAATTTGGATCAACGTGTAAATTCGACCATCCTATGGGATATAACAACAGTCAGAAAATGGCGATTTCTCGTTACCAGGTTGGGTCTCTTCTGGGTACTCTGTCTCCTTCAACAGTATCCTCTTTGAAAAATTCGGCCCACGCTACTCTCTGGGTCCAAGAATGA | 1245 | 49.64 | MDQYGRMRNGSDQQHEWSSAGEGEGGGGGGGGGTGLEESMWQMGLTANGASYPELPGVPNCVYYMRTGFCGYGSRCRYNHPPDRAAVVAAVRVTGEYPLRPGEPECQYYLKTWTCKYGASCKFHHPKHGVGSVNQAPLNLRGYPLRPGERECSYYLKSGQCKYGIACKFHHPQMNSIPMQPPSTPQFYHPQFHHSPLLSLPEQYGSTSTSLRVVTRPPVLPNSYMQGPYGPVLLSPGVVPISGWTSYSAPVTPSVLSPGAAHMSSSSTTSFLRPYTPITSPVVGTSGSSIQSAKVFPARPCEPECQYYLKTGNCKFGSSCRFHHPQDLVPPSAGCVLSPLGLPCRPGMQPCTFYLQNGHCKFGSTCKFDHPMGYNNSQKMAISRYQVGSLLGTLSPSTVSSLKNSAHATLWVQE | 414 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 6637882 | 6640148 | - | Conep20aG0095100.1 | Cone20ag0922 | 460826 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0922 | 414 | SUPERFAMILY | CCCH zinc finger | 347 | 372 | IPR036855 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
| Cone20ag0922 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 55 | 83 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 146 | 174 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | SUPERFAMILY | CCCH zinc finger | 149 | 173 | IPR036855 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | Gene3D | - | 56 | 135 | - | - | |
| Cone20ag0922 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 299 | 327 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | PANTHER | PROTEIN PHOSPHATASE RELATED | 35 | 373 | IPR050974 | GO:0003729(PANTHER) | |
| Cone20ag0922 | 414 | SMART | c3hfinal6 | 299 | 326 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | SMART | c3hfinal6 | 55 | 82 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | SMART | c3hfinal6 | 146 | 173 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | SMART | c3hfinal6 | 100 | 127 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | SMART | c3hfinal6 | 345 | 372 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 100 | 128 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | SUPERFAMILY | CCCH zinc finger | 59 | 84 | IPR036855 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | Gene3D | - | 275 | 333 | - | - | |
| Cone20ag0922 | 414 | Gene3D | - | 136 | 181 | - | - | |
| Cone20ag0922 | 414 | Gene3D | - | 336 | 382 | - | - | |
| Cone20ag0922 | 414 | SUPERFAMILY | CCCH zinc finger | 304 | 327 | IPR036855 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | MobiDBLite | consensus disorder prediction | 1 | 18 | - | - | |
| Cone20ag0922 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 57 | 82 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 147 | 173 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 101 | 127 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 303 | 326 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 347 | 372 | IPR000571 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | SUPERFAMILY | CCCH zinc finger | 104 | 128 | IPR036855 | GO:0046872(InterPro) | |
| Cone20ag0922 | 414 | ProSiteProfiles | Zinc finger C3H1-type profile. | 345 | 373 | IPR000571 | GO:0046872(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone15ag0782 | Cone-Chr15:4743249 | Cone20ag0922 | Cone-Chr20:6637882 | 1.14E-51 | dispersed | |
| Cone1ag1687 | Cone-Chr1:57933628 | Cone20ag0922 | Cone-Chr20:6637882 | 1.34E-28 | dispersed | |
| Cone20ag0922 | Cone-Chr20:6637882 | Cone3ag0631 | Cone-Chr3:3113517 | 1.67E-32 | dispersed | |
| Cone11ag0862 | Cone-Chr11:7153370 | Cone20ag0922 | Cone-Chr20:6637882 | 1.50E-87 | wgd | |
| Cone14ag0775 | Cone-Chr14:4485559 | Cone20ag0922 | Cone-Chr20:6637882 | 1.38E-46 | wgd | |
| Cone17ag0492 | Cone-Chr17:2390133 | Cone20ag0922 | Cone-Chr20:6637882 | 6.44E-157 | wgd | |
| Cone18ag0696 | Cone-Chr18:3717195 | Cone20ag0922 | Cone-Chr20:6637882 | 1.31E-88 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 45638 | None | None | None | None | Cone | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0922 | - | - | - | 0.0 |