Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0927 ATGGTCGACAACATACGCCATAGTTCTTCTACTACTACTACTACCACTACTTCTTCATCACAACTTGAAGTTAGAGAAGGATTTAAGAACTATGATTTTATTATCAATGCTTCAAGTGATCAAGATGGAGAAGGATCTGGATCAGCAATGGTCTTCAAAGAGCAAGATGGGTTGCTTCCGATAGCAAATGTCGGAAGGATCATGAAGAAGATTTTACCCCCAAACGCGAAGATCTCAAAAGAAGCAAAAGAAACCATGCAAGAATGTGTGTCTGAGTTCATAAGCTTTGTGACAGGCGAGGCTTCCGACAAGTGTTATAAAGAGAAGCGTAAGACTGTTAACGGCGACGATATTTGCTGGGCTATGGCTTCTCTGGGTTTTGATGATTATTCTGATCCCTTGAAGAAGTATTTGCTTAGGTTTAGAGAGGTTGAAGGAGATCATAGATCAAGTACATCAGCATCAGCTCATCAACAATTTGGCAAAGGTACTAATAATAATAATATTCACAATTTTGATGATGATCATGATCACGAGGATCAACAGAAGAATGATAATCTTGGTACTTACGGAATTTCCCAGAAAAGGAGTAAAAGACTTTGCAAGAAATGA 612 38.56 MVDNIRHSSSTTTTTTTSSSQLEVREGFKNYDFIINASSDQDGEGSGSAMVFKEQDGLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTGEASDKCYKEKRKTVNGDDICWAMASLGFDDYSDPLKKYLLRFREVEGDHRSSTSASAHQQFGKGTNNNNIHNFDDDHDHEDQQKNDNLGTYGISQKRSKRLCKK 203
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6668636 6669247 + Conep20aG0095800.1 Cone20ag0927 460831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0927 203 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 43 186 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER)
Cone20ag0927 203 MobiDBLite consensus disorder prediction 1 21 - -
Cone20ag0927 203 MobiDBLite consensus disorder prediction 151 168 - -
Cone20ag0927 203 MobiDBLite consensus disorder prediction 149 203 - -
Cone20ag0927 203 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 59 122 IPR003958 -
Cone20ag0927 203 ProSitePatterns NF-YB/HAP3 subunit signature. 89 105 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag0927 203 PRINTS CCAAT-binding transcription factor subunit A signature 105 123 - -
Cone20ag0927 203 PRINTS CCAAT-binding transcription factor subunit A signature 124 142 - -
Cone20ag0927 203 PRINTS CCAAT-binding transcription factor subunit A signature 86 104 - -
Cone20ag0927 203 SUPERFAMILY Histone-fold 55 168 IPR009072 GO:0046982(InterPro)
Cone20ag0927 203 Gene3D Histone, subunit A 49 188 IPR009072 GO:0046982(InterPro)
Cone20ag0927 203 MobiDBLite consensus disorder prediction 169 184 - -
Cone20ag0927 203 FunFam Nuclear transcription factor Y subunit B-3 47 172 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0927 Cone-Chr20:6668636 Cone8ag1366 Cone-Chr8:10907603 2.75E-49 dispersed
Cone10ag0770 Cone-Chr10:3905216 Cone20ag0927 Cone-Chr20:6668636 3.53E-42 wgd
Cone14ag0770 Cone-Chr14:4418786 Cone20ag0927 Cone-Chr20:6668636 3.62E-48 wgd
Cone17ag0499 Cone-Chr17:2465361 Cone20ag0927 Cone-Chr20:6668636 9.28E-100 wgd
Cone20ag0927 Cone-Chr20:6668636 Cone3ag0792 Cone-Chr3:4075231 8.58E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45639 PF15749 MRNIP 3.00E-14 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0927 K08065 - gmx:100796514 186.422