Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0927 | ATGGTCGACAACATACGCCATAGTTCTTCTACTACTACTACTACCACTACTTCTTCATCACAACTTGAAGTTAGAGAAGGATTTAAGAACTATGATTTTATTATCAATGCTTCAAGTGATCAAGATGGAGAAGGATCTGGATCAGCAATGGTCTTCAAAGAGCAAGATGGGTTGCTTCCGATAGCAAATGTCGGAAGGATCATGAAGAAGATTTTACCCCCAAACGCGAAGATCTCAAAAGAAGCAAAAGAAACCATGCAAGAATGTGTGTCTGAGTTCATAAGCTTTGTGACAGGCGAGGCTTCCGACAAGTGTTATAAAGAGAAGCGTAAGACTGTTAACGGCGACGATATTTGCTGGGCTATGGCTTCTCTGGGTTTTGATGATTATTCTGATCCCTTGAAGAAGTATTTGCTTAGGTTTAGAGAGGTTGAAGGAGATCATAGATCAAGTACATCAGCATCAGCTCATCAACAATTTGGCAAAGGTACTAATAATAATAATATTCACAATTTTGATGATGATCATGATCACGAGGATCAACAGAAGAATGATAATCTTGGTACTTACGGAATTTCCCAGAAAAGGAGTAAAAGACTTTGCAAGAAATGA | 612 | 38.56 | MVDNIRHSSSTTTTTTTSSSQLEVREGFKNYDFIINASSDQDGEGSGSAMVFKEQDGLLPIANVGRIMKKILPPNAKISKEAKETMQECVSEFISFVTGEASDKCYKEKRKTVNGDDICWAMASLGFDDYSDPLKKYLLRFREVEGDHRSSTSASAHQQFGKGTNNNNIHNFDDDHDHEDQQKNDNLGTYGISQKRSKRLCKK | 203 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 6668636 | 6669247 | + | Conep20aG0095800.1 | Cone20ag0927 | 460831 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0927 | 203 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 43 | 186 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
Cone20ag0927 | 203 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Cone20ag0927 | 203 | MobiDBLite | consensus disorder prediction | 151 | 168 | - | - | |
Cone20ag0927 | 203 | MobiDBLite | consensus disorder prediction | 149 | 203 | - | - | |
Cone20ag0927 | 203 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 59 | 122 | IPR003958 | - | |
Cone20ag0927 | 203 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 89 | 105 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cone20ag0927 | 203 | PRINTS | CCAAT-binding transcription factor subunit A signature | 105 | 123 | - | - | |
Cone20ag0927 | 203 | PRINTS | CCAAT-binding transcription factor subunit A signature | 124 | 142 | - | - | |
Cone20ag0927 | 203 | PRINTS | CCAAT-binding transcription factor subunit A signature | 86 | 104 | - | - | |
Cone20ag0927 | 203 | SUPERFAMILY | Histone-fold | 55 | 168 | IPR009072 | GO:0046982(InterPro) | |
Cone20ag0927 | 203 | Gene3D | Histone, subunit A | 49 | 188 | IPR009072 | GO:0046982(InterPro) | |
Cone20ag0927 | 203 | MobiDBLite | consensus disorder prediction | 169 | 184 | - | - | |
Cone20ag0927 | 203 | FunFam | Nuclear transcription factor Y subunit B-3 | 47 | 172 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone20ag0927 | Cone-Chr20:6668636 | Cone8ag1366 | Cone-Chr8:10907603 | 2.75E-49 | dispersed | |
Cone10ag0770 | Cone-Chr10:3905216 | Cone20ag0927 | Cone-Chr20:6668636 | 3.53E-42 | wgd | |
Cone14ag0770 | Cone-Chr14:4418786 | Cone20ag0927 | Cone-Chr20:6668636 | 3.62E-48 | wgd | |
Cone17ag0499 | Cone-Chr17:2465361 | Cone20ag0927 | Cone-Chr20:6668636 | 9.28E-100 | wgd | |
Cone20ag0927 | Cone-Chr20:6668636 | Cone3ag0792 | Cone-Chr3:4075231 | 8.58E-43 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
45639 | PF15749 | MRNIP | 3.00E-14 | No_clan | Cone | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0927 | K08065 | - | gmx:100796514 | 186.422 |