Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0929 ATGAGGAGGAAGACGAAAAACCTAACCAGGGGGACCAGGAAGATGAAGGGGACGCTGACGAGAAATTTGCAGATCCATCAGATGGGGCAACTATCTGGTGTCCCATCCCAGCAGCACCAGTTCTCATCCACCTCTCGCTTCCATGAATTCTTCTCATCGGAAGCTCCACCCACGCTTTCTCATATCCTTCCTTCCTCCTCCCCTCGCGGTGGCGCTGACTTCGATTCCAGTGTAGATGACAAGGATTTCATTCTCAGCCAGGACTTCTTTTGCACGCCTGATTATATCACGCCTGATAATCAGAATTTACTCAACAATCTGGATTGCAATAAGGAAAACATTCCATGTCCCAAATCACCTGATAAACTCTTTACTCTTAAAAGAAAGAGAAGCCATCAGGATGTTCTCGCACTAAATCCTCTGAGTCCTACATTGTGTGGACATCAGCAAGCAGTAGAACATGAACACGAAGCTTTTGGTGAAGATGAATCGAAGATGGAGAAATTAACAATGACTGGAACGCGTACAGTTCAGAGTTATGTTTCTCAATCTGCAGTTGCTTTACGCTGTAGGGTTATGCCTCCTCCTTGCATGGAAAACCCTTATTTGAAAGAGGCTTCGGACAGGGGTGTTGATCCTTTTGGTACCCAAAGAACAAAATGTGCAGGTTTCTTTTCTGCATTTGTTGGAGGAGACGGCCTTTCACGTTACCACACTGATTTTCATGAGATTGAGCAAATTGGTGTTGGTAACTTTAGCCGTGTCTTCAAAGTGTTAAAGAGAATTGATGGTTGCTTGTATGCTGTCAAACATAGCACAAGGCCTTTGCATCAAGACACAGAAAGGAGGAGAGCTCTAATGGAAGTTCAAGCTTTGGCAGCTTTAGGATCTCATGAGAACATTATTGGCTACTACTCTTCTTGGTTTGAAAATGAGCAACTCTACATTCAGACGGAGCTTTGTGATGGCAGCGTATCCAACAAAACATCTTCTCATCCATATTCTGAGGGAGAGGCATTGAAAGCCCTGCATGAGATTGTCAAGGCGTTACAGTTTATGCATGGGAGAGGAGTAGCTCACTTAGATGTGAAACCTGAGAATGTTTATGTAAAAAATGGTATTTATAAGCTTGGTGATTTTGGATGTGCTACTCTTCTTGATAAAAGCTTGCCAATTGAAGAGGGCGATGCACGATATATGCCTCAAGAAATACTAAACGAGAGATACGATTATCTTGACAAAGTAGATATCTTCTCCTTGGGCGTCTCTATTTATGAGCTTACTAGAGGATCGGCCTTGTCCGAATCAGGACCTCATTTAATGAATCTTAAGGAGGGAAAGCTGCCCCTCCTTCCTGGTCATTCACTGCAGTTTCAAAACTTACTCAAGGTCATGGTAGATCCAGACCCAGTGCGTAGGCCTTCCGCAAAGCAAGTTTTGGAGAATCCTATATTTGACAGGATCAAAAGAATGCAATAA 1479 43.48 MRRKTKNLTRGTRKMKGTLTRNLQIHQMGQLSGVPSQQHQFSSTSRFHEFFSSEAPPTLSHILPSSSPRGGADFDSSVDDKDFILSQDFFCTPDYITPDNQNLLNNLDCNKENIPCPKSPDKLFTLKRKRSHQDVLALNPLSPTLCGHQQAVEHEHEAFGEDESKMEKLTMTGTRTVQSYVSQSAVALRCRVMPPPCMENPYLKEASDRGVDPFGTQRTKCAGFFSAFVGGDGLSRYHTDFHEIEQIGVGNFSRVFKVLKRIDGCLYAVKHSTRPLHQDTERRRALMEVQALAALGSHENIIGYYSSWFENEQLYIQTELCDGSVSNKTSSHPYSEGEALKALHEIVKALQFMHGRGVAHLDVKPENVYVKNGIYKLGDFGCATLLDKSLPIEEGDARYMPQEILNERYDYLDKVDIFSLGVSIYELTRGSALSESGPHLMNLKEGKLPLLPGHSLQFQNLLKVMVDPDPVRRPSAKQVLENPIFDRIKRMQ 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6681068 6684077 - Conep20aG0096000.1 Cone20ag0929 460833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0929 492 Gene3D Transferase(Phosphotransferase) domain 1 320 489 - -
Cone20ag0929 492 Pfam Protein kinase domain 241 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0929 492 SUPERFAMILY Protein kinase-like (PK-like) 235 489 IPR011009 -
Cone20ag0929 492 ProSiteProfiles Protein kinase domain profile. 241 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0929 492 Gene3D Phosphorylase Kinase; domain 1 232 319 - -
Cone20ag0929 492 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cone20ag0929 492 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2-ALPHA KINASE EIF2-ALPHA KINASE -RELATED 71 481 IPR050339 GO:0004672(PANTHER)|GO:0004713(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)
Cone20ag0929 492 ProSitePatterns Protein kinases ATP-binding region signature. 247 270 IPR017441 GO:0005524(InterPro)
Cone20ag0929 492 SMART serkin_6 241 485 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cone20ag0929 492 FunFam Wee1-like protein kinase 320 489 - -
Cone20ag0929 492 FunFam WEE protein kinase 231 319 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0929 Cone-Chr20:6681068 Cone7ag0183 Cone-Chr7:767243 7.01E-17 dispersed
Cone20ag0929 Cone-Chr20:6681068 Cone4ag0328 Cone-Chr4:1498130 3.08E-19 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
82560 PF00071 Ras 1.70E-55 CL0023 Cone PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0929 K06632 - rcu:8271735 657.136