Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0959 ATGGCTTCTAAAATCTCAACTCTTGATCTCCTTAACACTTCATTTTCCATTTTTCTTTTTCTTATTCCATTACTTCTCTCCTTATCAAATGCAGACACCCCTCCACCTGCGTCGAGTCCCGTATCCACCGGGTCTATCTGCAAGTCCACTCCAGACCCTACTTATTGCAAATCTGTCCTACCAAGCCAGTCTGGCAGTGTCTACTACTACGGCAGGTTTTCGGTCCGTAAGGCATTGTCCCAGTCACGTAAATTTCTCCAGACCGTCGAGAAATATCTCAATCGTCGATCAACTTTGACCCAGAGTGCGATCCGAGCCCTGGAGGACTGTAGTTTACTTGCCGGACTAAACATTGATTTCTTGCAAACCTCATTTGTAACTGTAAGTACCGCAAACACGACTCTTCCCACCATGAAAGCCGATGATGTCCAAACCGAACTTAGTGCCATATTGACCAACCAACAAACATGTCTAGACGGCTTACAAGCTACATCTTCAGCTTGGAGTTTAAGAAACGGTCTCTCAACCCCACTTGCTAATGACACAAAGCTTTATAGCATGTCCTTAGCTTTGTTCACCAAAGGTTGGGTCCCAAAGAAGAAGAAATCAAAGACTCTAACCTGGCAGCCTAGTACGAAACAACTCGGGTTAAAAAACGGACATTTGCCACTTAAGATGTCCGGCCAAAGCCGGGCGGTCTACGAGAAGGTGAGTCGAAGAAAGGTTTTGGAAAAGGCAGGGAACGATAATTATCAGGTTGTGGTGAATAGTATCGTGGTGGTGAGTCAAGATGGAAGTGGAAATTTTACTACAATAACCGATGCTATTAGTGCGGCTCCAAATAACACTGCATCTACAAATGGATATTTCTTGATCTATGTTACGGCTGGTATTTATGAAGAATATGTATCCATTGCGAAGAACAAGAGGTATGTGATGATGATTGGGGATGGAATTAATCAAACGATTATTACTGGTAATAGAAGTGTTGTGGATGGGTGGACAACTTTCAACTCTGCAACATTTGCCGTAGTCGGACCGGGCTTTGTAGGAGTGAACATGACGATACGCAACACGGCAGGAGCGGTAAAGCACCAAGCAGTAGCCCTTAGAAACAGTGCCGATCTCTCCACCTTCTACTCGTGTAGCATCGAAGGCTACCAAGATACCTTATACACACATTCTCTACGTCAATTCTACCGAGAATGCGACGTCTACGGCACTGTTGATTTCATCTTCGGTAATGCAGCGGTTGTGCTCCAAAACTGCAATCTATATCCTCGACTTCCGATGGCAAATCAATTCAATGCCATCACAGCACAAGGTCGAACGGATCCGAATCAGAACACAGGGACTTCAATCCACAATTGCACAATTAAAGCCGCGGACGAATTAGCGATGAGTAACATGACTTTTCAGACTTACTTAGGCCGACCATGGAAGTTGTACTCAAGGACAGTATTTATGCAGAATTACATGGATAGTCTGATCAATTCTCAAGGATGGCGGGCTTGGGATGGAGATTTTGCATTGGCGACTTTGTACTATGCGGAGTATAACAATTCCGGACCGGGATCGAATGCGAGCCAAAGAGTGAATTGGAGTGGTTATCATGTGATAGTTAACAGCACTGATGCATCGAATTTCACGGTCGGGAATTTCATTCTTGGAGATGACTGGTTACCACAGACAGGAGTGCCTTATACATCCGGGTTGATTAGTTAG 1725 44.64 MASKISTLDLLNTSFSIFLFLIPLLLSLSNADTPPPASSPVSTGSICKSTPDPTYCKSVLPSQSGSVYYYGRFSVRKALSQSRKFLQTVEKYLNRRSTLTQSAIRALEDCSLLAGLNIDFLQTSFVTVSTANTTLPTMKADDVQTELSAILTNQQTCLDGLQATSSAWSLRNGLSTPLANDTKLYSMSLALFTKGWVPKKKKSKTLTWQPSTKQLGLKNGHLPLKMSGQSRAVYEKVSRRKVLEKAGNDNYQVVVNSIVVVSQDGSGNFTTITDAISAAPNNTASTNGYFLIYVTAGIYEEYVSIAKNKRYVMMIGDGINQTIITGNRSVVDGWTTFNSATFAVVGPGFVGVNMTIRNTAGAVKHQAVALRNSADLSTFYSCSIEGYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCTIKAADELAMSNMTFQTYLGRPWKLYSRTVFMQNYMDSLINSQGWRAWDGDFALATLYYAEYNNSGPGSNASQRVNWSGYHVIVNSTDASNFTVGNFILGDDWLPQTGVPYTSGLIS 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6855559 6857510 - Conep20aG0099400.1 Cone20ag0959 460863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0959 574 CDD PMEI-like_3 45 196 - -
Cone20ag0959 574 Pfam Pectinesterase 259 558 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone20ag0959 574 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
Cone20ag0959 574 Pfam Plant invertase/pectin methylesterase inhibitor 45 191 IPR006501 GO:0004857(InterPro)
Cone20ag0959 574 PANTHER PECTINESTERASE 17 563 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone20ag0959 574 Gene3D Invertase/pectin methylesterase inhibitor family protein 44 194 IPR035513 -
Cone20ag0959 574 Gene3D - 253 572 IPR012334 -
Cone20ag0959 574 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 45 194 IPR035513 -
Cone20ag0959 574 FunFam Pectinesterase 44 194 - -
Cone20ag0959 574 SUPERFAMILY Pectin lyase-like 254 571 IPR011050 -
Cone20ag0959 574 SMART PMEI_2 36 191 IPR006501 GO:0004857(InterPro)
Cone20ag0959 574 FunFam Pectinesterase 252 572 - -
Cone20ag0959 574 NCBIfam pectinesterase inhibitor domain 15 190 IPR006501 GO:0004857(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone17ag0453 Cone-Chr17:2145975 Cone20ag0959 Cone-Chr20:6855559 0 dispersed
Cone20ag0959 Cone-Chr20:6855559 Cone4ag0485 Cone-Chr4:2163415 1.61E-132 dispersed
Cone20ag0959 Cone-Chr20:6855559 Cone20ag0960 Cone-Chr20:6865051 2.03E-135 tandem
Cone8ag0082 Cone-Chr8:430323 Cone20ag0959 Cone-Chr20:6855559 1.03E-212 transposed
Cone15ag0754 Cone-Chr15:4429604 Cone20ag0959 Cone-Chr20:6855559 1.26E-107 wgd
Cone17ag0452 Cone-Chr17:2131807 Cone20ag0959 Cone-Chr20:6855559 3.97E-134 wgd
Cone20ag0959 Cone-Chr20:6855559 Cone3ag0815 Cone-Chr3:4194970 2.71E-95 wgd
Cone20ag0959 Cone-Chr20:6855559 Cone5ag0054 Cone-Chr5:269828 1.54E-78 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0959 K01051 - mdm:103449172 849.736