Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cone20ag0959 | ATGGCTTCTAAAATCTCAACTCTTGATCTCCTTAACACTTCATTTTCCATTTTTCTTTTTCTTATTCCATTACTTCTCTCCTTATCAAATGCAGACACCCCTCCACCTGCGTCGAGTCCCGTATCCACCGGGTCTATCTGCAAGTCCACTCCAGACCCTACTTATTGCAAATCTGTCCTACCAAGCCAGTCTGGCAGTGTCTACTACTACGGCAGGTTTTCGGTCCGTAAGGCATTGTCCCAGTCACGTAAATTTCTCCAGACCGTCGAGAAATATCTCAATCGTCGATCAACTTTGACCCAGAGTGCGATCCGAGCCCTGGAGGACTGTAGTTTACTTGCCGGACTAAACATTGATTTCTTGCAAACCTCATTTGTAACTGTAAGTACCGCAAACACGACTCTTCCCACCATGAAAGCCGATGATGTCCAAACCGAACTTAGTGCCATATTGACCAACCAACAAACATGTCTAGACGGCTTACAAGCTACATCTTCAGCTTGGAGTTTAAGAAACGGTCTCTCAACCCCACTTGCTAATGACACAAAGCTTTATAGCATGTCCTTAGCTTTGTTCACCAAAGGTTGGGTCCCAAAGAAGAAGAAATCAAAGACTCTAACCTGGCAGCCTAGTACGAAACAACTCGGGTTAAAAAACGGACATTTGCCACTTAAGATGTCCGGCCAAAGCCGGGCGGTCTACGAGAAGGTGAGTCGAAGAAAGGTTTTGGAAAAGGCAGGGAACGATAATTATCAGGTTGTGGTGAATAGTATCGTGGTGGTGAGTCAAGATGGAAGTGGAAATTTTACTACAATAACCGATGCTATTAGTGCGGCTCCAAATAACACTGCATCTACAAATGGATATTTCTTGATCTATGTTACGGCTGGTATTTATGAAGAATATGTATCCATTGCGAAGAACAAGAGGTATGTGATGATGATTGGGGATGGAATTAATCAAACGATTATTACTGGTAATAGAAGTGTTGTGGATGGGTGGACAACTTTCAACTCTGCAACATTTGCCGTAGTCGGACCGGGCTTTGTAGGAGTGAACATGACGATACGCAACACGGCAGGAGCGGTAAAGCACCAAGCAGTAGCCCTTAGAAACAGTGCCGATCTCTCCACCTTCTACTCGTGTAGCATCGAAGGCTACCAAGATACCTTATACACACATTCTCTACGTCAATTCTACCGAGAATGCGACGTCTACGGCACTGTTGATTTCATCTTCGGTAATGCAGCGGTTGTGCTCCAAAACTGCAATCTATATCCTCGACTTCCGATGGCAAATCAATTCAATGCCATCACAGCACAAGGTCGAACGGATCCGAATCAGAACACAGGGACTTCAATCCACAATTGCACAATTAAAGCCGCGGACGAATTAGCGATGAGTAACATGACTTTTCAGACTTACTTAGGCCGACCATGGAAGTTGTACTCAAGGACAGTATTTATGCAGAATTACATGGATAGTCTGATCAATTCTCAAGGATGGCGGGCTTGGGATGGAGATTTTGCATTGGCGACTTTGTACTATGCGGAGTATAACAATTCCGGACCGGGATCGAATGCGAGCCAAAGAGTGAATTGGAGTGGTTATCATGTGATAGTTAACAGCACTGATGCATCGAATTTCACGGTCGGGAATTTCATTCTTGGAGATGACTGGTTACCACAGACAGGAGTGCCTTATACATCCGGGTTGATTAGTTAG | 1725 | 44.64 | MASKISTLDLLNTSFSIFLFLIPLLLSLSNADTPPPASSPVSTGSICKSTPDPTYCKSVLPSQSGSVYYYGRFSVRKALSQSRKFLQTVEKYLNRRSTLTQSAIRALEDCSLLAGLNIDFLQTSFVTVSTANTTLPTMKADDVQTELSAILTNQQTCLDGLQATSSAWSLRNGLSTPLANDTKLYSMSLALFTKGWVPKKKKSKTLTWQPSTKQLGLKNGHLPLKMSGQSRAVYEKVSRRKVLEKAGNDNYQVVVNSIVVVSQDGSGNFTTITDAISAAPNNTASTNGYFLIYVTAGIYEEYVSIAKNKRYVMMIGDGINQTIITGNRSVVDGWTTFNSATFAVVGPGFVGVNMTIRNTAGAVKHQAVALRNSADLSTFYSCSIEGYQDTLYTHSLRQFYRECDVYGTVDFIFGNAAVVLQNCNLYPRLPMANQFNAITAQGRTDPNQNTGTSIHNCTIKAADELAMSNMTFQTYLGRPWKLYSRTVFMQNYMDSLINSQGWRAWDGDFALATLYYAEYNNSGPGSNASQRVNWSGYHVIVNSTDASNFTVGNFILGDDWLPQTGVPYTSGLIS | 574 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
20 | 6855559 | 6857510 | - | Conep20aG0099400.1 | Cone20ag0959 | 460863 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cone20ag0959 | 574 | CDD | PMEI-like_3 | 45 | 196 | - | - | |
Cone20ag0959 | 574 | Pfam | Pectinesterase | 259 | 558 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
Cone20ag0959 | 574 | ProSitePatterns | Pectinesterase signature 2. | 405 | 414 | IPR033131 | - | |
Cone20ag0959 | 574 | Pfam | Plant invertase/pectin methylesterase inhibitor | 45 | 191 | IPR006501 | GO:0004857(InterPro) | |
Cone20ag0959 | 574 | PANTHER | PECTINESTERASE | 17 | 563 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
Cone20ag0959 | 574 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 44 | 194 | IPR035513 | - | |
Cone20ag0959 | 574 | Gene3D | - | 253 | 572 | IPR012334 | - | |
Cone20ag0959 | 574 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 45 | 194 | IPR035513 | - | |
Cone20ag0959 | 574 | FunFam | Pectinesterase | 44 | 194 | - | - | |
Cone20ag0959 | 574 | SUPERFAMILY | Pectin lyase-like | 254 | 571 | IPR011050 | - | |
Cone20ag0959 | 574 | SMART | PMEI_2 | 36 | 191 | IPR006501 | GO:0004857(InterPro) | |
Cone20ag0959 | 574 | FunFam | Pectinesterase | 252 | 572 | - | - | |
Cone20ag0959 | 574 | NCBIfam | pectinesterase inhibitor domain | 15 | 190 | IPR006501 | GO:0004857(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cone17ag0453 | Cone-Chr17:2145975 | Cone20ag0959 | Cone-Chr20:6855559 | 0 | dispersed | |
Cone20ag0959 | Cone-Chr20:6855559 | Cone4ag0485 | Cone-Chr4:2163415 | 1.61E-132 | dispersed | |
Cone20ag0959 | Cone-Chr20:6855559 | Cone20ag0960 | Cone-Chr20:6865051 | 2.03E-135 | tandem | |
Cone8ag0082 | Cone-Chr8:430323 | Cone20ag0959 | Cone-Chr20:6855559 | 1.03E-212 | transposed | |
Cone15ag0754 | Cone-Chr15:4429604 | Cone20ag0959 | Cone-Chr20:6855559 | 1.26E-107 | wgd | |
Cone17ag0452 | Cone-Chr17:2131807 | Cone20ag0959 | Cone-Chr20:6855559 | 3.97E-134 | wgd | |
Cone20ag0959 | Cone-Chr20:6855559 | Cone3ag0815 | Cone-Chr3:4194970 | 2.71E-95 | wgd | |
Cone20ag0959 | Cone-Chr20:6855559 | Cone5ag0054 | Cone-Chr5:269828 | 1.54E-78 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cone20ag0959 | K01051 | - | mdm:103449172 | 849.736 |