Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0960 ATGTACAACTTCAGAAAGAAAACAGAGCTACTTCTAACTCCAGGTGCAAGACTAGCAGCAGCAGCAGCACTACTACTTTCACTTTCCCTTTTTATCTTCTTCACTGTAACAGCTTTTGTAACAAACACGCCCGCAAAAATCACGCACATTCACCTCCACAACCACAACCACCTCCAAATCGCACACTCCACCTGCTCCGGCACGCTCTACCCCTTCCTCTGCGTCTCCACCATCGCTTCTTTCTCAGATCTCACCTCCAAATCGCCTAAGGAAATCGCTCACTCCTCCATTAACACCACCATTTCCGAAGTCAAGATCGCATCCTACAACTGCTCGAAGATCAAGAGCAAGCTCCTCAGGCACCTCGATCTCATTGAGCAACGCGCCCTAGATGACTGCCTTGAACTGTTCGAAGAGACCGTGGCGGAACTACGCACTGCTCTGTCAGATCTCTCGTCGAAGAAGAGATCGCTCGCTGATGCTTACGATGACTTGCAGACCTTGCTTAGCGCCGCAATGACGAACCAGTACACTTGCCTCGACGGATTCGCGTACAGTAAGAAGAAGGTGAGGCGTCGGATCGAGAAGTTTATGAACAGGATCTCGCATCATGTGAGTAATACTCTGGTTATGCTGAAGAAGATTCCTGGAATTAATGGAACTAAGTCGTCGGTGGGGACTCCAGAGTTCCAGGCCCCAGTGAAAGACGGATTTCCGACTTGGATCTCGTCCAAGGATCGGAGACTTTTGCAGTTGCCTGTGAACCAGACTAAGTTCGATTTGGTGGTGGCTCAAGATGGCTCTGGAAATTTCACCACCGTCACCGACGCCGTGAACGCCTCTCCAAACTCCACCACAACCAGGTTTGTGATATATATAAAGGCGGGGGCGTATTTCGAGAATGTGGAAGTGGTAAGCAAGAAGACGAATCTGATGTTCGTCGGAGACGGGATCGGAAAGACGGTGATCAAAGCTAGTCGAAATGTGGTTGATGGGTGGACTACTTTCCGGTCAGCCACCGTCGCTGTGGTAGGGAACGGATTCATAGCCAAAGGCATAACCGTAGAGAACGCCGCGGGTCCAAGCAAACACCAAGCCGTAGCCCTAAGAAGCAGTTCGGACCTCTCAGCATTTTACAACTGCAGTTTCGTAGGCTATCAAGACACCCTCTACGTCCACTCCCTCCGTCAATTTTACCGCGAATGCGATATCTACGGCACCGTAGATTTCGTCTTCGGAAACGCCGCCGTCGTGTTTCAAAACTGCAACTTATATGCTCGTAAACCAAACGACAATCAGAAGAACATCTTCACCGCACAAGGCAGAGAGGACCCGAACCAGAACACCGGGATTTCACTCCTCAACTGCAAAGTGGCGGCAGCCTCCGACCTCATTCCGGTGAAGTCGTCGTTTAAAAACTACCTCGGGCGACCATGGAAGGAGTACTCAAGGACAGTGGTTATGAAGTCTAACATCGAGGATTTAATTGATCCGGCCGGATGGCTTGAATGGAACGGCACTTTTGCGTTGAGCACGTTGTATTATGGCGAGTACTTGAACCGGGGTTTGGGTTCGAATACAACGGGTAGAGTGACCTGGCCGGGTTATCAGGTTATCAATAGCTCGACTGAGGCTAGTCAGTTTACAATTGGGGCGTTTATTCAAGGAAATGAATGGTTGAATTCTACTGGTATTCCATATTCTTTGATGCTTTGA 1716 49.59 MYNFRKKTELLLTPGARLAAAAALLLSLSLFIFFTVTAFVTNTPAKITHIHLHNHNHLQIAHSTCSGTLYPFLCVSTIASFSDLTSKSPKEIAHSSINTTISEVKIASYNCSKIKSKLLRHLDLIEQRALDDCLELFEETVAELRTALSDLSSKKRSLADAYDDLQTLLSAAMTNQYTCLDGFAYSKKKVRRRIEKFMNRISHHVSNTLVMLKKIPGINGTKSSVGTPEFQAPVKDGFPTWISSKDRRLLQLPVNQTKFDLVVAQDGSGNFTTVTDAVNASPNSTTTRFVIYIKAGAYFENVEVVSKKTNLMFVGDGIGKTVIKASRNVVDGWTTFRSATVAVVGNGFIAKGITVENAAGPSKHQAVALRSSSDLSAFYNCSFVGYQDTLYVHSLRQFYRECDIYGTVDFVFGNAAVVFQNCNLYARKPNDNQKNIFTAQGREDPNQNTGISLLNCKVAAASDLIPVKSSFKNYLGRPWKEYSRTVVMKSNIEDLIDPAGWLEWNGTFALSTLYYGEYLNRGLGSNTTGRVTWPGYQVINSSTEASQFTIGAFIQGNEWLNSTGIPYSLML 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6865051 6867778 + Conep20aG0099500.1 Cone20ag0960 460864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0960 571 Pfam Pectinesterase 260 557 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cone20ag0960 571 Pfam Plant invertase/pectin methylesterase inhibitor 62 211 IPR006501 GO:0004857(InterPro)
Cone20ag0960 571 Gene3D Invertase/pectin methylesterase inhibitor family protein 59 215 IPR035513 -
Cone20ag0960 571 NCBIfam pectinesterase inhibitor domain 26 214 IPR006501 GO:0004857(InterPro)
Cone20ag0960 571 SUPERFAMILY Pectin lyase-like 257 569 IPR011050 -
Cone20ag0960 571 Gene3D - 254 571 IPR012334 -
Cone20ag0960 571 PANTHER PECTINESTERASE 28 562 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cone20ag0960 571 ProSitePatterns Pectinesterase signature 2. 404 413 IPR033131 -
Cone20ag0960 571 SMART PMEI_2 56 211 IPR006501 GO:0004857(InterPro)
Cone20ag0960 571 Coils Coil 134 154 - -
Cone20ag0960 571 CDD PMEI-like_3 63 217 - -
Cone20ag0960 571 FunFam Pectinesterase 254 571 - -
Cone20ag0960 571 FunFam Pectinesterase 57 216 - -
Cone20ag0960 571 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone14ag0014 Cone-Chr14:112197 Cone20ag0960 Cone-Chr20:6865051 2.87E-156 dispersed
Cone15ag0016 Cone-Chr15:125619 Cone20ag0960 Cone-Chr20:6865051 2.76E-154 dispersed
Cone17ag0033 Cone-Chr17:214851 Cone20ag0960 Cone-Chr20:6865051 2.94E-172 dispersed
Cone17ag0452 Cone-Chr17:2131807 Cone20ag0960 Cone-Chr20:6865051 0 dispersed
Cone1ag0980 Cone-Chr1:54911997 Cone20ag0960 Cone-Chr20:6865051 5.78E-159 dispersed
Cone20ag0960 Cone-Chr20:6865051 Cone20ag1370 Cone-Chr20:8765996 2.05E-172 dispersed
Cone20ag0959 Cone-Chr20:6855559 Cone20ag0960 Cone-Chr20:6865051 2.03E-135 tandem
Cone14ag0748 Cone-Chr14:4183617 Cone20ag0960 Cone-Chr20:6865051 5.30E-121 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0960 K01051 - gmx:100802881 773.852