Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag0971 ATGGCGTCGAGGAATCGAACCGCTCTGTACAGGAAGCACAGAGATGCCGTGAAGAGCGTCCGAGCGCCGTTATCTTCCTCTGCGTCCAGTTCGAGCGGTCCGGTGATTGAGATGGTGAACGCTTCTTTTCTTCGTTCCAAATGCTCTTCTTATGCGCCTCTCAGCACAGATGATTCAGGTCCTTCAAGTGGTGATGCTTATACAGTGGGTTTACCACCTGCTTGGGTGGATGATTCTGAAGAAATAGCTAATAACATACAATGCGCACGAGTAAAGGTGGCTGAATTAGTGAAGGCTCATGCCAAAGCTCTAATGACTTCATTTGGAGATGGAAAAGAAGATCAACGCATGATTGAGGCCCTTACCCAAGAGATTACAGCATTCTCTTGCAACAGACCTTCAGAACTTGTAGATGAAACTCTGCAGAAAACAGTCAATGTATCTGAAGCATCTGCAGAAGCAAACAGAGGTTTGTGTATTATGTACGGACGTGATGGGATTGATTTGGAGATGAATTTTAACGGAAACAAAACTAGATTGGATGATGATAAATTTAGTGATGTGATGATGAAGCTAACGAAGAGCGAGCAGTTCTCAGAGGAAAGGGCAAGAGAGATAAAACAGGTAGTGGAGTCAGTGAATGAGCTCGCTCAAATTATGAAGGATCTCTGTCCTTGTTGTAGACCAGGTCGGGCACTATATTTGACCGAATATCCAGAACGTTGCTGCGACTGTTGCCGATGGTTTAAAACAGCTCCAAAAGGTCCTCTTACATGCACATTATTGCCTTTCAGAATATGTTGCCTTGTCGTAGCTCCAGCTCTTGAGAAGATCATCAAAAACGCCTCCTGGCGCAAGCACTCCAAGCTTGCTCATGAAAGCAAATCTGTTCTCGAACGAATCACTTCACACCCTGATGGCTCTCTCCCAGGTCCTCTTCGCGATGGCCATGAAACAGGTTTTTGGGTGCTATTAAGCAGTATTTGTGTCTTGCTCTTTTGA 1002 45.21 MASRNRTALYRKHRDAVKSVRAPLSSSASSSSGPVIEMVNASFLRSKCSSYAPLSTDDSGPSSGDAYTVGLPPAWVDDSEEIANNIQCARVKVAELVKAHAKALMTSFGDGKEDQRMIEALTQEITAFSCNRPSELVDETLQKTVNVSEASAEANRGLCIMYGRDGIDLEMNFNGNKTRLDDDKFSDVMMKLTKSEQFSEERAREIKQVVESVNELAQIMKDLCPCCRPGRALYLTEYPERCCDCCRWFKTAPKGPLTCTLLPFRICCLVVAPALEKIIKNASWRKHSKLAHESKSVLERITSHPDGSLPGPLRDGHETGFWVLLSSICVLLF 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 6911166 6914228 + Conep20aG0100600.1 Cone20ag0971 460875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag0971 333 Gene3D - 72 157 - -
Cone20ag0971 333 SUPERFAMILY t-snare proteins 70 223 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag0971 Cone-Chr20:6911166 Cone12ag1286 Cone-Chr12:9819818 1.03E-06 dispersed
Cone10ag0804 Cone-Chr10:4080924 Cone20ag0971 Cone-Chr20:6911166 2.37E-65 wgd
Cone17ag0442 Cone-Chr17:2078757 Cone20ag0971 Cone-Chr20:6911166 3.84E-101 wgd
Cone20ag0971 Cone-Chr20:6911166 Cone3ag0826 Cone-Chr3:4239376 1.24E-65 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag0971 K08489 - rcu:8265473 244.973