Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag0983 | ATGATGAACACGAAGAGCCTCGACTTCACTGCGGACAAAGTCCTGGCGAAGGAATTCATTTCGAACTTCGCCGATGCAAATGGCGAAGCTAAGTACATGAACATATTGCAAGAGGTGGCGAATCGCAAACTTCGTGCAGTCCAGATTGATCTTGAGGATCTCTTTAATTATAAGGACGTGGATGAAGAATTTGTCAGACGGATAACCGAGAACACCAGAAGGTACATTGGAATTTTCGCGGAAGCTATTGATGATCTCATTCCAGAACCCACAGAGGCATTTCTGGATGATGATCATGACATATTGATGACTCAAAGATCGGATGATGGGCCAGATAATGTGGATGGTACCGATCCGTTTCAACAGATGCCTCCTGAAATCAAGCGTTACTTTGAAGTTTATATAAGAGCATCCTCAAAGGGTCGTCCATTTACTATCAGAGAGGTGAGGGCTTCAAATATCGGCCAGCTTGTAAGGTTATCTGGCATTGTGACACGCTGTTCAGATGTTAAGCCATTGATGAGCGTAGCTGTCTATACATGCGAAGACTGTGGCTTTGAGATTTACCAGGAAGTAACAGCTCGAGTGTTCATGCCCCTTCTTGAGTGTCCATCAAAGCGGTGTCTAATAAATAGAAATAAAGGGAACCTTATTCTACAACTTCGAGCATCAAAGTTTTTGAAGTTTCAGGAGGCCAAAATTCAGGAGTTATCTGAACATGTTCCAAAAGGTCACATTCCTCGGACAATGTCTGTTCACTTAAGGGGTGAGCTCACAAGGAAGGTTGCACCTGGTGATGTTGTTGAGTTATCTGGGATATTTCTTCCTATTCCATACACTGGCTTTAGGGCGATGCGTGCTGGCCTAGTTGCAGATACTTTCTTAGAGGCCATGTCTGTCAATCATTCAAAGAAAAGATATGAAGAATATGAACTCAGAGGAGATGAGGAGGAACAAATTGTTCGTTTAGCTGAGGATGGCGATATTTATAATAAGTTGGCACGGTCATTGGCCCCTGAAATTTTCGGCCATGAAGATATTAAGAAGGCTCTACTTCTCCTCCTTGTTGGTGCTCCTCACCGGAAGTTAAAAGATGGCATGAAGATTAGAGGAGACTTGCATATCTGTTTAATGGGTGATCCTGGAGTTGCAAAGAGTCAACTCCTTAAGCACATCATCAACATTGCACCAAGGGGAGTCTACACAACTGGCAAAGGAAGCAGTGGTGTTGGTCTAACTGCTGCTGTTCAGAAAGATCCAGTAACAAATGAGATGGTTCTCGAGGGAGGGGCATTGGTACTAGCAGATATGGGTATATGTGCCATCGACGAGTTTGACAAGATGGATGAATCTGATCGCACAGCAATTCACGAAGTAATGGAACAGCAAACTGTCAGCATCGCCAAGGCAGGGATCACTACTTCTCTGAATGCAAGGACTGCTGTACTTGCTGCTGCCAATCCAGCATGGGGAAGATATGACCTGCGCAGAACTCCAGCTGAAAATATCAATCTTCCACCGGCCCTTCTGTCAAGATTTGATCTTCTTTGGCTAATCCTGGACCGGGCAGATATGGATACTGATCTCGAAATGGCTAGGCATGTTGTTTACGTCCACCAGAATAAAGAATCTCCTGCTCTTGGGTTCACTCCACTTGAACCATCTGTTCTTCGTGCGTATATTTCAGCTGCTAGAAGAGTCTCTCCTTATATCCCTAAGGATTTAGAGGAGTATATTGCAAGTGCCTATTCCAACATTCGACAAGACGAAAATAAAACCGATGCTCCACATACCTATACAACAGTCAGAACTCTACTCAGCATTCTTCGTATATCAGCAGCACTAGCAAGACTGAGATTCTCAGAAACTGTGGCTCAGAGTGATGTAGATGAAGCACTGCGTTTAATGCAGATGTCAAAATTCTCTTTGTACTCAGATGATCGTCAGCGATCAGGTCTGGATGCCATCTCAGATATCTATTCAATCCTGAGAGATGAAGCTGCCAGGAGGAATGAAATGGACGTTAGCTATGCTCATGCCCTCAATTGGATTTCCAGAAAGGGATACAGTGAAGCCCAATTGAAACAATGCTTGGAGGAATATGCAGCGTTGAATGTATGGCAGATACATCCTCATTCCTTCGACATTCGTTTCATCGATTGA | 2163 | 43.97 | MMNTKSLDFTADKVLAKEFISNFADANGEAKYMNILQEVANRKLRAVQIDLEDLFNYKDVDEEFVRRITENTRRYIGIFAEAIDDLIPEPTEAFLDDDHDILMTQRSDDGPDNVDGTDPFQQMPPEIKRYFEVYIRASSKGRPFTIREVRASNIGQLVRLSGIVTRCSDVKPLMSVAVYTCEDCGFEIYQEVTARVFMPLLECPSKRCLINRNKGNLILQLRASKFLKFQEAKIQELSEHVPKGHIPRTMSVHLRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSVNHSKKRYEEYELRGDEEEQIVRLAEDGDIYNKLARSLAPEIFGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHICLMGDPGVAKSQLLKHIINIAPRGVYTTGKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENINLPPALLSRFDLLWLILDRADMDTDLEMARHVVYVHQNKESPALGFTPLEPSVLRAYISAARRVSPYIPKDLEEYIASAYSNIRQDENKTDAPHTYTTVRTLLSILRISAALARLRFSETVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARRNEMDVSYAHALNWISRKGYSEAQLKQCLEEYAALNVWQIHPHSFDIRFID | 720 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 6964190 | 6969492 | + | Conep20aG0101800.1 | Cone20ag0983 | 460887 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag0983 | 720 | Pfam | MCM N-terminal domain | 17 | 132 | IPR027925 | - | |
| Cone20ag0983 | 720 | FunFam | DNA replication licensing factor MCM7 | 173 | 227 | - | - | |
| Cone20ag0983 | 720 | ProSiteProfiles | MCM family domain profile. | 329 | 535 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone20ag0983 | 720 | SMART | mcm | 142 | 641 | IPR031327 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone20ag0983 | 720 | Gene3D | - | 314 | 646 | IPR027417 | - | |
| Cone20ag0983 | 720 | PANTHER | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER | 12 | 685 | IPR031327 | GO:0000727(PANTHER)|GO:0003677(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006268(PANTHER)|GO:0006270(PANTHER)|GO:0006271(PANTHER)|GO:0017116(PANTHER)|GO:0032508(InterPro)|GO:0042555(PANTHER) | |
| Cone20ag0983 | 720 | Pfam | MCM OB domain | 146 | 277 | IPR033762 | - | |
| Cone20ag0983 | 720 | CDD | MCM7 | 332 | 639 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 458 | 471 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 370 | 385 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 482 | 494 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 509 | 517 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein family signature | 430 | 444 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone20ag0983 | 720 | FunFam | DNA replication licensing factor MCM7 | 12 | 103 | - | - | |
| Cone20ag0983 | 720 | Pfam | MCM P-loop domain | 317 | 539 | IPR001208 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0032508(InterPro) | |
| Cone20ag0983 | 720 | Pfam | MCM AAA-lid domain | 556 | 639 | IPR041562 | - | |
| Cone20ag0983 | 720 | ProSitePatterns | MCM family signature. | 438 | 446 | IPR018525 | GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006260(InterPro) | |
| Cone20ag0983 | 720 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 339 | 647 | IPR027417 | - | |
| Cone20ag0983 | 720 | FunFam | DNA replication licensing factor MCM7 | 314 | 646 | - | - | |
| Cone20ag0983 | 720 | Gene3D | - | 146 | 274 | IPR012340 | - | |
| Cone20ag0983 | 720 | Gene3D | - | 173 | 227 | - | - | |
| Cone20ag0983 | 720 | SUPERFAMILY | Nucleic acid-binding proteins | 16 | 297 | IPR012340 | - | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 179 | 190 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 123 | 135 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 288 | 298 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 161 | 172 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone20ag0983 | 720 | PRINTS | Mini-chromosome maintenance (MCM) protein 7 signature | 196 | 208 | IPR008050 | GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)|GO:0006270(InterPro)|GO:0042555(InterPro) | |
| Cone20ag0983 | 720 | SMART | AAA_5 | 371 | 524 | IPR003593 | GO:0016887(InterPro) | |
| Cone20ag0983 | 720 | Gene3D | - | 13 | 104 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone20ag0983 | Cone-Chr20:6964190 | Cone3ag1220 | Cone-Chr3:30947681 | 4.42E-109 | dispersed | |
| Cone20ag0983 | Cone-Chr20:6964190 | Cone16ag0446 | Cone-Chr16:6781760 | 1.48E-90 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag0983 | K02210 | - | csv:101219064 | 1296.18 |