Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1024 ATGGTAGCAGAAGCAGAGGTGGTTATGTGTCAACAGAGCGTGCCGATTAGGTACTTTGGTAAGGGAGCTCATCCTCATAATCAGAGTCTTGTTCATGAGGTGGAAGATGTTGTAGCTTCGAGTTTCGATCAGCTACGAGCTTCCGACTCAGTTGCAGTTGATTTATCGAGCTCCGATTCGGCTGTTAAACCTGCCGAGAAAATTCTAGATCCGGGTCTTGAATCTGATATCATTCAGTATCTTCCTTGCATCCGTTCTGGTAGCTATGCTGATATTGGACCCAGAAGACACATGGAAGATGAGCATATACGGATAGACGACTTATGTTCCCATTTAGGATCACTCTTCAACTTCCCCAAACCAAGTGCACTTTTCGGGGTATTTGACGGGCATGGAGGACCTGAAGCAGCAGCTTATATTCGAAAAAATGTCATCAGACTCCTTTTTGAAGATACAAACTTTCCTCAAACATCTGAGGTTGATGAAATCTTCTTAGAAGAGCTTGAGAACTCCCTCCACAAGTCATATCTTCTGGCCGATCAAGCTCTTGCCAATGATCATACTGTGAGTCGTTCCTCTGGCACTACAGCACTGACTGCTCTTGTATTTGGAAGGATTCTAATAGTGGCCAATGCTGGTGATTGTCGAGCAGTTCTCTCTCATAAAGGAGAAGCCATAGACATGTCTCAAGACCATAGACCAATCCGTCTCTCAGAAAGAAGGCGGGTGGAAGAATTGGGCGCATATATAGATGATGGCTATCTTAACGGTGTTTTATCAGTAACCAGAGCATTAGGGGATTGGGACATGAAATTCCCTCTAGACTCTCCTTCCCCTCTTATTCCAGACCCAGAATGCAAGCAGATTATTCTGACTAAAGAAGATGAGTTCCTAATCATAGCCTGTGACGGGGTTTGGGATGTGTTGTCAAGTCAACAAGCGGTCAACATTGTCCGTAGAGGACTTAGATGCCATGACGACCCTGAGCAGTGTGCTAGAGACCTTGTCATGGCTGCTTTGAGACTCAATACATTTGATAATCTAACGGTCATTGTTGTTTGCTTCTCTAGCCTTGATGATAGGGAAGAGGCATCTAGGGAGAGGAAATTGAGATGCTGTAGCCTCTCTGCGGAGGCCCTTTGTAACTTGAGGAGCTGGTTGGACAATTGA 1170 45.13 MVAEAEVVMCQQSVPIRYFGKGAHPHNQSLVHEVEDVVASSFDQLRASDSVAVDLSSSDSAVKPAEKILDPGLESDIIQYLPCIRSGSYADIGPRRHMEDEHIRIDDLCSHLGSLFNFPKPSALFGVFDGHGGPEAAAYIRKNVIRLLFEDTNFPQTSEVDEIFLEELENSLHKSYLLADQALANDHTVSRSSGTTALTALVFGRILIVANAGDCRAVLSHKGEAIDMSQDHRPIRLSERRRVEELGAYIDDGYLNGVLSVTRALGDWDMKFPLDSPSPLIPDPECKQIILTKEDEFLIIACDGVWDVLSSQQAVNIVRRGLRCHDDPEQCARDLVMAALRLNTFDNLTVIVVCFSSLDDREEASRERKLRCCSLSAEALCNLRSWLDN 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7163667 7166100 + Conep20aG0105900.1 Cone20ag1024 460928
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1024 389 SMART PP2C_4 75 353 IPR001932 -
Cone20ag1024 389 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169(InterPro)
Cone20ag1024 389 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Cone20ag1024 389 Gene3D - 79 363 IPR036457 -
Cone20ag1024 389 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Cone20ag1024 389 SMART PP2C_SIG_2 100 355 IPR001932 -
Cone20ag1024 389 SUPERFAMILY PP2C-like 79 357 IPR036457 -
Cone20ag1024 389 FunFam Probable protein phosphatase 2C 22 71 358 - -
Cone20ag1024 389 CDD PP2Cc 84 355 IPR001932 -
Cone20ag1024 389 PANTHER PROTEIN PHOSPHATASE 2C 59 355 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1024 Cone-Chr20:7163667 Cone8ag0907 Cone-Chr8:8797371 1.03E-97 dispersed
Cone14ag0667 Cone-Chr14:3439058 Cone20ag1024 Cone-Chr20:7163667 3.72E-17 wgd
Cone15ag0704 Cone-Chr15:3824156 Cone20ag1024 Cone-Chr20:7163667 4.19E-132 wgd
Cone17ag0390 Cone-Chr17:1857864 Cone20ag1024 Cone-Chr20:7163667 8.50E-264 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1024 K14803 - mtr:11417065 541.191