Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1033 ATGGAGACCAGATTTAAAGGTGAAGCTGCTCATCCTCATCCTCATCCTCCTCCCCCACCTCCTCATCATCATCAATTATACAACATGAATTCTGTTGACTTAAGGGCGGTAGGGAAGAGGACTCTTGAATGGGATTTAAACGATTGGAAATGGGATGGTGATCTTTTCATTGCTACCCCACTAAACCCGGTCCCACCTCGTCCCTTTTTCCCATCTGGGTCCGAAATTCCAGCACCCATAGGAGGAGGAGGAGGAGGCTCATCTAACAGCTCTTCCTCTTGCTCTGAAGAACTTAATCTAGGGAGTCAGAAAGAGAAGAAAGAATCAATGGAGAAGAAGAAGAGGAGAGTTGTTGTAGTGAAGGATTATAGTTCGAACGATGAAACAGCTACCTTGGGGTTAAATCTCGGAAGGAATGGGTTTTCGGTGGGAGAGAGAGTGGTAGTTGGGAATTGGGAGGAATCAAATGGGAAAAATACCAAATTGGTGGCTGGAAATTCTAGCCGTTCGATTTGCCAGGTGGAGGATTGTGGTGCCGATCTGAGTGGTGCTAAGGATTATCATAGAAGGCATAAAGTTTGCGAGATGCATTCAAAAGCTAGTCGAGCACTTGTCGGAAATGTTATGCAACGGTTTTGTCAGCAGTGTAGTAGGTTTCATGTTCTGCAAGAGTTTGATGAAGGGAAGAGAAGTTGTCGTAGGCGGTTAGCTGGTCACAATAAACGGAGGAGAAAAACAAATCCCGGAACTGCTGTCAATACAAGTTCTTCAGCAGATAATCAGAATAGTGGCTATCTAATTATAAGTCTGTTAAAGATACTTTCTAACATGCACTCGCAGAAGTCGGACCAGGCAATGGATCAGGATCTGCTATCTCATCTCTTAAGGAGCCTTGCATCATCTCAAACTAATGAACATGGGAGGGAAAACCTGTCAGGTCTTTTGGAGAAATCTCAAAATTTTCCAAGCAACGGGAGATTAATTGGTGCTTCTGAATTAGCATCCACATTTCCCTCAAACTGTCCTCAAGGCTCACCAGGGCCATCTAAACCGCATAACACCTTAACTTTTCTAGAGACGCCACAACAAGACTCGGATGATGGCACGGAAGATATGGAGAGGTCTCATGTCCCTACAAACTTGGGGACCGGTTTTCATGGGTGCCCTTCATGGGTTCAAAATGACTGTCATCAGTCAAGTCCTCCTCACCCTAGTGGAAATTCAGATTCGGCTTGTACCCAATCACCTTCTAGCTCTAATGGAGAAGCCCAGAGTCGTACTGATCGGATTGTGTTCAAGCTCTTCGGGAAAGAACCAAATGACTTTCCTATGGTACTGCGAACACAGATTCTTGATTGGTTATCTCACAGCCCTACTGACATTGAAAGTTACATTAGGCCTGGTTGTGTTATTCTGACAATTTATCTACGCCAAACAGCAACAGCTTGGGAGGAACTTTGCTATGACCTGAGATCTAGTTTGAACAGGCTTCTCCAAGCTTCAGATGATGATGATGCTTTTTGGAGAAGTGGATGGGTTTATGTTAGGATTCACAATCAAATTGCATTTATCCATCATGGTCAGGTTGTTGTGGACAGATCTCTAACTCTTAGACGTAATCATCATAGTAAAATAATAAGTGTTAAACCCATTGCAATAACTGCATCTGACAAGGCTCGTATTTCAGTTAGAGGCTCAAATTTGTTTGGACCTGCAACCAGGTTGCTCTGTGCACTAGGAGGAAAATATCTGATTCAGAAAGCTACTGATGAATCAATGATAAATTTTGAGAGCTCGGAAAAGCAAGATGACCTCCAATGCATGAGCTTTTCTTGCTCTGTTCCAATAGTGAATGGAAGGGGGTTCATTGAGGTTGAAGATCATGGTTTAAGTAGCAGCTTCTTTCCTTTCATTGTAGCTGAGGAGGATGTTTGTTCAGAGATTCGAATTCTAGAAACCGCATTAGAGTTTACTGAAATGTATTCTGAATCTTCGGATTCACTGGAAGAATGTAGAAAGATGGAAGAAGTAAGAAGTCAGGCCATGGACTTTATAGATGAAATGGGTTGGCTTCTTCATAGAAGTCAATTGAAATCAAGATTAGGTCACTTAAACCCTAACCCAAACCTCTTCCCTCTAGAACGGTACAAGTGGCTTGTAGAGTTTTCAATGGACCGTGATTGGTGTGCCGTTTTGAAGAAGCTTCTGGATATTCTTCTTGACGGGACTGTAAGTATAGGAGAGAGCAATTCCTTGAATCTTGCATTATTGGAGCTGGGCCTTCTTCACCGCGCTGTGAGGAGAAATAGCCGCTCTCTGGTTGAGTTCCTGTTGAGATACACGTCCAAGAAAGAGAGTGTGTCGGTTGATGAGGAAGCTGGTGTTGACTTCTTATTTAGACCAGATCATGTGGGCCCTGGGTCTCTGACTCCACTTCATATTGCAGCTGGAAAAGATGGTTCCGAAGATGTGATTGATGCCTTGACTGATGATCCCAGGATGGTTGGAATCAAAGCATGGAAGAATTCTCGAGACAGCACAGGATTTACCCCAGAGGATTATGCCCGTCTACGCGGTCATTACTCTTACATCCACCTTGTACAGAAAAAAATCAACAAGAGAACAACACCACCACCACCTGAACATATTGTCCTCAACATCCCTAGCTCCCTTCCAGACACTAGTAGCTCCAATGAAAAACAAAACAATGAGCTGGCTACAGGCTTAGAGATTGAGGCCCGAAGAGCGATTCAACAGGCCTGCAGGCTCTGTGATCAGAAACCAGCCTGTAGAATCTCGAGCAAGGCTTTCGTTTACAGGCCTGCAATGCTATCAATGGTTGCCATAGCTGCAGTTTGTGTTTGCGTGGCTCTACTGTTCAAGAGCTCACCCGAAGTGTTCTATGTGTTCCGTCCGTTCCGGTGGGAATCTTTGCGTTACGGAACAAGCTGA 2952 44.21 METRFKGEAAHPHPHPPPPPPHHHQLYNMNSVDLRAVGKRTLEWDLNDWKWDGDLFIATPLNPVPPRPFFPSGSEIPAPIGGGGGGSSNSSSSCSEELNLGSQKEKKESMEKKKRRVVVVKDYSSNDETATLGLNLGRNGFSVGERVVVGNWEESNGKNTKLVAGNSSRSICQVEDCGADLSGAKDYHRRHKVCEMHSKASRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPGTAVNTSSSADNQNSGYLIISLLKILSNMHSQKSDQAMDQDLLSHLLRSLASSQTNEHGRENLSGLLEKSQNFPSNGRLIGASELASTFPSNCPQGSPGPSKPHNTLTFLETPQQDSDDGTEDMERSHVPTNLGTGFHGCPSWVQNDCHQSSPPHPSGNSDSACTQSPSSSNGEAQSRTDRIVFKLFGKEPNDFPMVLRTQILDWLSHSPTDIESYIRPGCVILTIYLRQTATAWEELCYDLRSSLNRLLQASDDDDAFWRSGWVYVRIHNQIAFIHHGQVVVDRSLTLRRNHHSKIISVKPIAITASDKARISVRGSNLFGPATRLLCALGGKYLIQKATDESMINFESSEKQDDLQCMSFSCSVPIVNGRGFIEVEDHGLSSSFFPFIVAEEDVCSEIRILETALEFTEMYSESSDSLEECRKMEEVRSQAMDFIDEMGWLLHRSQLKSRLGHLNPNPNLFPLERYKWLVEFSMDRDWCAVLKKLLDILLDGTVSIGESNSLNLALLELGLLHRAVRRNSRSLVEFLLRYTSKKESVSVDEEAGVDFLFRPDHVGPGSLTPLHIAAGKDGSEDVIDALTDDPRMVGIKAWKNSRDSTGFTPEDYARLRGHYSYIHLVQKKINKRTTPPPPEHIVLNIPSSLPDTSSSNEKQNNELATGLEIEARRAIQQACRLCDQKPACRISSKAFVYRPAMLSMVAIAAVCVCVALLFKSSPEVFYVFRPFRWESLRYGTS 983
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7194361 7200459 - Conep20aG0106900.1 Cone20ag1033 460937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1033 983 MobiDBLite consensus disorder prediction 235 258 - -
Cone20ag1033 983 MobiDBLite consensus disorder prediction 1 26 - -
Cone20ag1033 983 MobiDBLite consensus disorder prediction 334 363 - -
Cone20ag1033 983 Pfam SBP domain 172 245 IPR004333 GO:0003677(InterPro)
Cone20ag1033 983 Gene3D - 163 233 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone20ag1033 983 MobiDBLite consensus disorder prediction 84 99 - -
Cone20ag1033 983 SUPERFAMILY Ankyrin repeat 761 866 IPR036770 -
Cone20ag1033 983 ProSiteProfiles Zinc finger SBP-type profile. 169 246 IPR004333 GO:0003677(InterPro)
Cone20ag1033 983 SUPERFAMILY SBT domain 171 251 IPR036893 GO:0003677(InterPro)|GO:0005634(InterPro)
Cone20ag1033 983 Gene3D - 738 877 IPR036770 -
Cone20ag1033 983 MobiDBLite consensus disorder prediction 68 113 - -
Cone20ag1033 983 FunFam Squamosa promoter-binding-like protein 14 163 233 - -
Cone20ag1033 983 MobiDBLite consensus disorder prediction 395 424 - -
Cone20ag1033 983 MobiDBLite consensus disorder prediction 334 380 - -
Cone20ag1033 983 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 47 980 IPR044817 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone20ag1033 Cone-Chr20:7194361 Cone6ag0159 Cone-Chr6:786581 1.26E-33 dispersed
Cone11ag0721 Cone-Chr11:4985716 Cone20ag1033 Cone-Chr20:7194361 0 wgd
Cone17ag0385 Cone-Chr17:1823945 Cone20ag1033 Cone-Chr20:7194361 0 wgd
Cone18ag0772 Cone-Chr18:4379669 Cone20ag1033 Cone-Chr20:7194361 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45643 PF00536 SAM_1 1.90E-14 CL0003 Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1033 - - - 0.0