Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1052 ATGCCCGGAAATATAATGGAGATTGAGCTTCATAACTTCATGACCTTCAATCACTTGAAATGCAAACCAGCATCTCGACTAAACCTTGTAATTGGGCCAAATGGTTCAGGTAAAAGCTCTCTTGTGTGTGCCATTGCACTTGGTCTTGGGGGGGAGCCTCAGCTGCTTGGGAGGGCAACGAGTATTGGAGCATATGTCAAGCGTGGGGAGGAGTCGGGTTATATTAAAATTACATTAAGAGGAGACACAGAAGAGGAGCAGATTACCATCATGCGCAGAATGGACACTCATAATAAGTCTGAGTGGTTGTTCAATGGTAAAGTCGTGCCAAAAAAAGATTTAACTGAAATCATTCAAAGGTTCAACATTCAAGTTAATAATTTGACTCAATTCTTACCACAGGACAGGGTCTGTGAGTTTGCCAAATTAAGTCCTGTGCAACTCTTAGAAGAGACTGAAAAGGCTGTTGGTGATCCACAACTTCCAATCCAACACCGTGCTCTAATAGAGAAGACTCGCGAATTAAAGAATATAGAGCGTGCTGTTGAAAAAAATGGCGACACCTTAAATCAGTTGAAGGCACTAAATTCCGAGCAAGAGAGAGATGTTGAGCGTGTTCATCAAAGAGAAGAGCTCTTAGCAAAGGTTGAGGCCATGAAGAAGAAATTACCATGGCTGAAGTATGATATGAAGAAGGCTGAATATATGGAAGCCAAGAACCGTGAGACAGATGCCAAGCGGAAGTTGGATGAAGCTGCAAGAGCATTAAATAATCTAAAAGAACCAATTGAGAAGGAGAAAAGGGAGAAAGCATCACTGGATACTAAGATCAAGAAAATTAGCAATCTCATGAATGATCATTCCAAGAAGCGCATGGAATGCCTGGGGAATGAAAACCATTTGGGTGTACAAGTACAAGGAAAGTACAAAGAAATGGAAGACCTGAGGAGACAAGAAGAATCTCGTCAACAAAGACTTTTACAAGCAAAAGAGGAACTTGCTGCTGCTGAGCTAGAACTTGAAAATTTGCCAACCTATGAGCCTCCTAAAGATGATATTGAAAGATTAGGCAGTCAAATTTTGGAGCTAGAAGTTTCTGCAAATCAAAAAAGGCTTTTGAAGACTGAGAATGAAAAGTTTTTATCTCAAAAAAGGTCAACCTTGAGGCAATGTGCAGATAGATTAAAGGATATGGAGAGTACAAATATGAAACTTTTGCAGGCATTGAGAAATTCAGGTGTTGAAAAGATTTTTGATGCTTATCGGTGGGTGCAAGAACATCGTCATGAATTCAACAAGGAGGTCTATGGTCCAGTTTTGCTAGAGGTTAATGTTTCAAACCGATTTCATGCGGACTACTTAGAAGGTCATCTAGCTTTTTACATCTGGAAGTCTTTCATAACTCAAAATTCTCATGATCGTGATTTGCTGGTAAAAAACCTAAGTTCATTCGATGTTCCAATTTTGAATTATGTGGGTGGTGAAGGCCAGTCAAGAGAGCCCTTTGACATTTCCGAGAGGGTGCGTGCACTTGGCATCACTTCTAGGCTTGACCAAGTTTTTGATGCTCCCAATGCCGTCAAGGAGGTTTTGACTGGCCAATTTGGTTTGGATAGATCATATATTGGTTCAAAGGAAACTGATCAAAAGGCAGACGAGGTCTCCAAATTGGGAATTTTAGACTTTTGGACTCCAGAAAATCACTATAGGTGGACGCGGTCTAGATATGGCAATCATATATCTGGAAGTGTGGAGCCAGTGGGTCGCTCACGACTTCTTATGGGCAGCTTGGATGCAAGTGAAATTGATGGGCTGAGGTCCCGGAAGAATGAGCTCGAACAATCTGTTTCCACTTTAGAAGAAAGCTATAGGTCTCTTCAAAATGAAATAAGACACATAGAGGACGAAGCAGCTAAGCTTCGTAAAGAGCGGGAGGAAATCATCAACACTGTACAGCATGAGAAGAGAAAACGTCGTGAAATGGAAAATCGTATCAATCAAAGGAGAAAAAAATTAGGTTCTATGGAGCCGGAGGATGACCTGGATACTGTTATACAGAAGCTTACCGATGAATCAGCAAAATTGAATATTCAGCGCTACCATTATGTGATTGAAATTAAGAATCTACTTGTTGAAGCTCTATCTTCCAGACGATCGATTGCTGCAAAGCATATGGCCTCTATTCAATTGGAAGCAAAGATTAGAGATTTGGAGGCCAATCTAAAGCAGCATGAAAAGTTTGCCCTGCAAGCATCGCTGCATTTTGAGAATTGTAAGCAGGAAGTAGAAGATTGTCGACAGCGACTATCAGCTGCCAAGAGGCATGCAGAATCTATTGCTGTGATCACTGCAGAACTTGAAAAGGAGTTCCTTGAGATGCCTACAACAATTGAGGAATTGGAGGCTGCTATTCAAGATAATATCTCTGAAGCTAATTCAATTCTTTTCTTGAACCACAATATACTGGAGGAATATGAACACCGCCGGCGTCAGATAGAGTCCATTGCTTTAAAACTAGAAGCTGATAAGGAGGAGCTAAGGAGAAATAGAGCTGAAGTGGATAAACTCAAGAAGAATTGGCTTCCCACATTGAGAAACCTTGTTGCTCAGATAAATGATACTTTTGGCCGTAACTTCCAAGAAATGGCTGTTGCTGGAGAAGTTTCATTGGATGAGCATGACATGGATTTCGATCAATTTGGAATACTTATAAAAGTAAAGTTCAGACAAACGGGACAGCTTCAGGTTCTCAGTGCTCATCATCAATCTGGAGGGGAACGTTCGGTTTCAACAATCCTATATCTTGTTTCTCTACAAGATCTGACCAACTGTCCCTTTCGGGTCGTTGATGAGATTAATCAGGGCATGGATCCTATAAATGAACGAAAAATGTTCCAACAACTGGTGAGAGCTGCAAGTCAACCAAACACACCACAGTGTTTTTTACTAACCCCGAAGTTGCTACCAGATCTGGAATACAGTGAGGCCTGCAGTATACTAAACATCATGAACGGACCTTGGATCGAGCAGCCATCGAAAGTATGGAGCGGTGGAGATTGTTGGGGAACAGTCATGGATTTAGTAGGTAAAGGTAGAAGCTGA 3102 41.3 MPGNIMEIELHNFMTFNHLKCKPASRLNLVIGPNGSGKSSLVCAIALGLGGEPQLLGRATSIGAYVKRGEESGYIKITLRGDTEEEQITIMRRMDTHNKSEWLFNGKVVPKKDLTEIIQRFNIQVNNLTQFLPQDRVCEFAKLSPVQLLEETEKAVGDPQLPIQHRALIEKTRELKNIERAVEKNGDTLNQLKALNSEQERDVERVHQREELLAKVEAMKKKLPWLKYDMKKAEYMEAKNRETDAKRKLDEAARALNNLKEPIEKEKREKASLDTKIKKISNLMNDHSKKRMECLGNENHLGVQVQGKYKEMEDLRRQEESRQQRLLQAKEELAAAELELENLPTYEPPKDDIERLGSQILELEVSANQKRLLKTENEKFLSQKRSTLRQCADRLKDMESTNMKLLQALRNSGVEKIFDAYRWVQEHRHEFNKEVYGPVLLEVNVSNRFHADYLEGHLAFYIWKSFITQNSHDRDLLVKNLSSFDVPILNYVGGEGQSREPFDISERVRALGITSRLDQVFDAPNAVKEVLTGQFGLDRSYIGSKETDQKADEVSKLGILDFWTPENHYRWTRSRYGNHISGSVEPVGRSRLLMGSLDASEIDGLRSRKNELEQSVSTLEESYRSLQNEIRHIEDEAAKLRKEREEIINTVQHEKRKRREMENRINQRRKKLGSMEPEDDLDTVIQKLTDESAKLNIQRYHYVIEIKNLLVEALSSRRSIAAKHMASIQLEAKIRDLEANLKQHEKFALQASLHFENCKQEVEDCRQRLSAAKRHAESIAVITAELEKEFLEMPTTIEELEAAIQDNISEANSILFLNHNILEEYEHRRRQIESIALKLEADKEELRRNRAEVDKLKKNWLPTLRNLVAQINDTFGRNFQEMAVAGEVSLDEHDMDFDQFGILIKVKFRQTGQLQVLSAHHQSGGERSVSTILYLVSLQDLTNCPFRVVDEINQGMDPINERKMFQQLVRAASQPNTPQCFLLTPKLLPDLEYSEACSILNIMNGPWIEQPSKVWSGGDCWGTVMDLVGKGRS 1033
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7357085 7364892 - Conep20aG0109000.1 Cone20ag1052 460956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1052 1033 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 1 1026 IPR027131 GO:0000724(PANTHER)|GO:0000724(InterPro)|GO:0003697(PANTHER)|GO:0005524(InterPro)|GO:0005634(PANTHER)|GO:0006281(InterPro)|GO:0016887(InterPro)|GO:0030915(InterPro)|GO:0030915(PANTHER)
Cone20ag1052 1033 FunFam Structural maintenance of chromosomes 5 829 1000 - -
Cone20ag1052 1033 Coils Coil 755 775 - -
Cone20ag1052 1033 Coils Coil 309 339 - -
Cone20ag1052 1033 Coils Coil 727 747 - -
Cone20ag1052 1033 Coils Coil 235 283 - -
Cone20ag1052 1033 Coils Coil 822 859 - -
Cone20ag1052 1033 Coils Coil 175 209 - -
Cone20ag1052 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 976 IPR027417 -
Cone20ag1052 1033 Coils Coil 602 671 - -
Cone20ag1052 1033 Gene3D - 4 192 IPR027417 -
Cone20ag1052 1033 Gene3D - 827 991 IPR027417 -
Cone20ag1052 1033 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 735 984 IPR027417 -
Cone20ag1052 1033 Pfam RecF/RecN/SMC N terminal domain 5 971 IPR003395 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1052 K22803 - - csv:101210248 1637.47
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone1ag1073 Cone-Chr1:55324773 Cone20ag1052 Cone-Chr20:7357085 1.70E-11 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g1074 . . . . . . . . . Cmo17g00945 . . . . Sed07g0592 . Cpe12g00841 Bhi09g00709 Tan06g0629 Cmetu01g0859 . Hepe03g1771 . . . . . . . . . . Cone20ag1052 . . Lsi02g02546 . . . . . . . . . . . . . . . Cma17g00970 . Car17g00928 . . . . . . . . . Cla09g00408 Cam09g0435 Cec09g0438 Cco09g0425 Clacu09g0440 . Cre09g0421 . . Chy01g01830 Cme01g02432
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cone20ag1052 . 1 1024 Structural Maintenance of Chromosomes family AT5G15920 67.2 0.0e+00 1336.6
Cone1ag1073 . 18 1060 Structural Maintenance of Chromosomes family AT5G07660 59.5 0.0e+00 1171.4
Cone1ag1073 . 18 1060 Structural Maintenance of Chromosomes family AT5G61460 62.8 0.0e+00 1246.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008822 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 32