Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cone20ag1069 | ATGGCCATGGCTGCGCGTATGAGATCGGGCCTTCCTCTCCTCAGCAAGTTTCTCAAATCCGATTCAGTGTCCACTCAGAGATCCACCCTCGAACGAGCGCTACTTTGTCCTACTTTCACCAACTCTGAGTCTTCGAGGAACTATGCCACTGCATCTGGGAAGACTGAAGTAAAAGTGAAGGTTCCTCTGGCCCTGTTTGGGGGTACCGGAAACTATGCGTCCGCCTTGTATATTGCTGCAATAAAAGCTAATGCACTGGACAAGGTCGAGTCTGAGCTTCTTGATCTTGTTGAGGCTACAAAGGGAAGCCCCAGATTTTCGCAGTTCACGAAGGATCCAACAGTGCGTCCAGATATTAGGGTCAATGCTATTAAAGAAATATCTGCAGCAGCTAAATTTTCAGATGTTACAAAGAATTTCTTGCTTGTGCTTGCTTTGAATGGAAGGCTGAAATTTGTAGACAGCATATCAAAGAGATTTCAGGAGTTAACAATGGCTCATAGGGGAGAAGTGAAGGCCATCGTGACAACGGTTATTCCGCTTCCAGCTGAAGAGGAGAAAGAACTGAAGGAGACACTGCAAGATATCCTTGGTCAAGGAAAGAAGGTTAAGCTTGAACAGAAGATTGATCCAAGTATTCTCGGCGGTCTAGTAGTGGAGTTCGGAGATAAGGTCTTCGACATGTCCATTAAGACCCGAGCACGCCAGATGGAGAGGTTCTTGCGAGAACCCATTAACATTGGCAACCTCTAG | 753 | 46.48 | MAMAARMRSGLPLLSKFLKSDSVSTQRSTLERALLCPTFTNSESSRNYATASGKTEVKVKVPLALFGGTGNYASALYIAAIKANALDKVESELLDLVEATKGSPRFSQFTKDPTVRPDIRVNAIKEISAAAKFSDVTKNFLLVLALNGRLKFVDSISKRFQELTMAHRGEVKAIVTTVIPLPAEEEKELKETLQDILGQGKKVKLEQKIDPSILGGLVVEFGDKVFDMSIKTRARQMERFLREPINIGNL | 250 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 20 | 7462213 | 7464629 | - | Conep20aG0111000.1 | Cone20ag1069 | 460973 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cone20ag1069 | 250 | Pfam | ATP synthase delta (OSCP) subunit | 70 | 239 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | ProSitePatterns | ATP synthase delta (OSCP) subunit signature. | 203 | 222 | IPR020781 | GO:0015986(InterPro)|GO:0016020(InterPro)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | PANTHER | ATP SYNTHASE DELTA CHAIN | 1 | 244 | IPR000711 | GO:0000274(PANTHER)|GO:0015986(PANTHER)|GO:0015986(InterPro)|GO:0042776(PANTHER)|GO:0045261(PANTHER)|GO:0046933(PANTHER)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | Gene3D | - | 69 | 161 | IPR026015 | - | |
| Cone20ag1069 | 250 | Hamap | ATP synthase subunit delta [atpD]. | 64 | 243 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | NCBIfam | ATP synthase F1 subunit delta | 71 | 240 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | SUPERFAMILY | N-terminal domain of the delta subunit of the F1F0-ATP synthase | 69 | 170 | IPR026015 | - | |
| Cone20ag1069 | 250 | PRINTS | ATP synthase delta subunit signature | 68 | 87 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | PRINTS | ATP synthase delta subunit signature | 216 | 234 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | PRINTS | ATP synthase delta subunit signature | 201 | 216 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | PRINTS | ATP synthase delta subunit signature | 149 | 163 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) | |
| Cone20ag1069 | 250 | PRINTS | ATP synthase delta subunit signature | 138 | 149 | IPR000711 | GO:0015986(InterPro)|GO:0046933(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cone17ag0755 | Cone-Chr17:5671832 | Cone20ag1069 | Cone-Chr20:7462213 | 2.09E-11 | transposed | |
| Cone20ag0682 | Cone-Chr20:4212310 | Cone20ag1069 | Cone-Chr20:7462213 | 3.57E-11 | transposed | |
| Cone17ag0342 | Cone-Chr17:1599672 | Cone20ag1069 | Cone-Chr20:7462213 | 1.57E-155 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cone20ag1069 | K02137 | - | rcu:8272168 | 355.525 |