Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1071 ATGAATGATAATAGACAAATGGAGATAAATTACGCGGAGACCGGCTATCCTTACACAGGGACCGAAAGCTTTATGAACTTCTTCGAAGGCCTTAACCATGTTCCTCAGCACTATACTAATGCAGGTCCTAGCCATAATCAGGATAGTGTATATTGGTCGATTAATACGAACTCATACAAATTCGGGGAATTCAGTCCGGGCAGTACCTCTTATTACAGCCCTTATGAGGAAAATTATTATATTCCTAGAACTGATATGGGTGGTGCTAGAGCTTGGGAGTATCATTCAGCCGAAACAGCCGTTCACCATGTCGAAGATCCTATAATTACGGAATTGCCATCCAGAGTGGATGATGTCATTGATGAACATTCTACCCCTGAAGAATGCATTGTGACAAGTGACCAGAGTTCAAGTAGTTCTCAAGTTGTATGGCAAGAGGACATTGATCCGGATAACATGACCTACGAGGAATTACTGGACTTAGGGGAGGCAATAGGAAGTGAAGGGAGAGGTCTTTCAAAGGAACTTATAAGCTTGCTTCCTACTTCTAAGTACAAGTTCAGTGACCTCTTCTCAAGGAAAAAGTCCAGCGAGCGATGTGTGGTTTGTCAGATGAGGTATAAACGAGGCGATCGGCAAATGAAATTGCCATGCAAGCATCTCTATCATGATGAATGCATCACCAAATGGCTTACCATTAACAAAATATGTCCGGTTTGCAACGTTGAAGTATTTGGAGAGGAATCATCAAGGCATTGA 759 42.29 MNDNRQMEINYAETGYPYTGTESFMNFFEGLNHVPQHYTNAGPSHNQDSVYWSINTNSYKFGEFSPGSTSYYSPYEENYYIPRTDMGGARAWEYHSAETAVHHVEDPIITELPSRVDDVIDEHSTPEECIVTSDQSSSSSQVVWQEDIDPDNMTYEELLDLGEAIGSEGRGLSKELISLLPTSKYKFSDLFSRKKSSERCVVCQMRYKRGDRQMKLPCKHLYHDECITKWLTINKICPVCNVEVFGEESSRH 252
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7467830 7475042 - Conep20aG0111200.1 Cone20ag1071 460975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1071 252 ProSiteProfiles Zinc finger RING-type profile. 200 241 IPR001841 -
Cone20ag1071 252 SMART ring_2 200 240 IPR001841 -
Cone20ag1071 252 FunFam E3 ubiquitin ligase BIG BROTHER 162 245 - -
Cone20ag1071 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 245 IPR013083 -
Cone20ag1071 252 SUPERFAMILY RING/U-box 199 245 - -
Cone20ag1071 252 Pfam Ring finger domain 199 241 IPR001841 -
Cone20ag1071 252 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 245 IPR033276 GO:0004842(PANTHER)|GO:0004842(InterPro)|GO:0016567(InterPro)|GO:0031624(PANTHER)|GO:0046621(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone11ag1486 Cone-Chr11:10518899 Cone20ag1071 Cone-Chr20:7467830 9.72E-64 dispersed
Cone17ag0827 Cone-Chr17:6628011 Cone20ag1071 Cone-Chr20:7467830 2.49E-21 dispersed
Cone18ag0109 Cone-Chr18:571020 Cone20ag1071 Cone-Chr20:7467830 4.30E-60 dispersed
Cone1ag1518 Cone-Chr1:57254784 Cone20ag1071 Cone-Chr20:7467830 2.89E-27 dispersed
Cone20ag1071 Cone-Chr20:7467830 Cone5ag0512 Cone-Chr5:2156129 1.50E-28 dispersed
Cone17ag0339 Cone-Chr17:1590414 Cone20ag1071 Cone-Chr20:7467830 2.12E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1071 K19045 - gmx:100785290 319.701