Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cone20ag1102 ATGGATCTTGGATTAAGCTTGGGAGACAGTACTACTACTGCCAAGGGGCCGTTTAGCTTATCGGAAAATCCTCGAGAAAAAAGCTGGAGTGCTTCTTCTTCGTCTTCTTCTCACAAAGGTCATCTAGGCTTTTGCATGAGCTTATCCATAGCTCCTCACTCCAGCACAGATGATCATCAAGACGCGCCGATTCAGCTCGATCTTCTTCCTCACATTCCTGTTCTTCGCAACCTATCATGGAGTTCGGAGGGAGCGACGAGGGGTTTAGACGTGAACCGAGCTCCGACGACATCTCCGGCAGCGGTGGAGGATAGAGAAGGATCCCCGAACAGTGCAGCGTCGTCGTTTCAGATGGAGTTTTGCATGTTCAGATCACCGGCAGGGTCTGGTGGAAACGACGGCGGAGCCGATCATCCGACAGAGAGGGCTTGCTCAAGAGGTAGCGATGAAGATGAGAGCGGTTCTAATACCAGAAAGAAACTCCGGCTCTCTAAACAACAATCCGCCTTCCTTGAAGAAAGCTTCAAAGAACACAACACCCTCAATCCCAAGCTGAAACTTTCACTAGCAAAGCAGCTTAATCTACGTCCACGACAAGTGGAAGTCTGGTTTCAGAATAGAAGGGCAAGAACGAAACTGAAACAAACGGAGGTGGATTGCGAGTATCTGAAGAGATGTTGCGAAACGTTGACCGAAGAGAACAGAAGGCTCCAAAAGGAGCTTCAGGATTTGAGAGCCTTGAAGTCTACCAACTCCTTCTACATGCAATTACCAGCTACCACTCTTACCATGTGCCCTTCTTGTGAAAGTGTCGCCGCCATTACCTCCTCTTCATCCGCCGCCGCCGTAGCAGCAACCACCACTACTAACATCACCGGTGAACCTGGTTCTACTAAATCATCTGGGTTTTCTTTAATTACTAGACCCAGACCGTCTTCTACTCCCTTCCATAACTCCACCCACCTATCCAAAGCTTCATGA 981 49.13 MDLGLSLGDSTTTAKGPFSLSENPREKSWSASSSSSSHKGHLGFCMSLSIAPHSSTDDHQDAPIQLDLLPHIPVLRNLSWSSEGATRGLDVNRAPTTSPAAVEDREGSPNSAASSFQMEFCMFRSPAGSGGNDGGADHPTERACSRGSDEDESGSNTRKKLRLSKQQSAFLEESFKEHNTLNPKLKLSLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQDLRALKSTNSFYMQLPATTLTMCPSCESVAAITSSSSAAAVAATTTTNITGEPGSTKSSGFSLITRPRPSSTPFHNSTHLSKAS 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
20 7605619 7607057 - Conep20aG0114300.1 Cone20ag1102 461006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cone20ag1102 326 MobiDBLite consensus disorder prediction 291 326 - -
Cone20ag1102 326 ProSitePatterns 'Homeobox' domain signature. 189 212 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cone20ag1102 326 MobiDBLite consensus disorder prediction 87 113 - -
Cone20ag1102 326 Pfam Homeobox associated leucine zipper 214 248 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag1102 326 MobiDBLite consensus disorder prediction 1 38 - -
Cone20ag1102 326 MobiDBLite consensus disorder prediction 139 159 - -
Cone20ag1102 326 SMART halz 214 257 IPR003106 GO:0006355(InterPro)|GO:0043565(InterPro)
Cone20ag1102 326 CDD homeodomain 158 215 IPR001356 GO:0003677(InterPro)
Cone20ag1102 326 CDD bZIP 207 246 - -
Cone20ag1102 326 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 37 287 IPR050762 -
Cone20ag1102 326 ProSiteProfiles 'Homeobox' domain profile. 154 214 IPR001356 GO:0003677(InterPro)
Cone20ag1102 326 Coils Coil 220 250 - -
Cone20ag1102 326 MobiDBLite consensus disorder prediction 127 163 - -
Cone20ag1102 326 SUPERFAMILY Homeodomain-like 144 215 IPR009057 -
Cone20ag1102 326 Pfam Homeodomain 158 212 IPR001356 GO:0003677(InterPro)
Cone20ag1102 326 Gene3D - 162 212 - -
Cone20ag1102 326 SMART HOX_1 156 218 IPR001356 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cone19ag0475 Cone-Chr19:3895198 Cone20ag1102 Cone-Chr20:7605619 2.59E-78 dispersed
Cone20ag1102 Cone-Chr20:7605619 Cone9ag0657 Cone-Chr9:3125555 1.68E-67 dispersed
Cone17ag0307 Cone-Chr17:1456852 Cone20ag1102 Cone-Chr20:7605619 8.36E-171 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
45648 PF01255 Prenyltransf 6.30E-77 No_clan Cone TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cone20ag1102 K09338 - rcu:8289299 301.597